View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8129_low_9 (Length: 306)
Name: NF8129_low_9
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 55853 - 56137
Alignment:
| Q |
8 |
caaaatgcatagattacgctcctaagaaacgaaaatggaaaatgtggctatgagtgcgagatgcacatttatctcagtgttcaaaaaattgaaaacaatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55853 |
caaaatgcatagattacgctcctaagaaacgaaaatggaaaatgttgctatgagtgcgagatgcacatttatctcagtgttcaaaaaattgaaaacgatt |
55952 |
T |
|
| Q |
108 |
gcaacatgaagaacatttttcagcaaagattgaaaaggaagtaatcagatataaacctttctcatattctcgaacactgtcgagtgtaaaaataatactt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
55953 |
gcaacatgaagaacatttttcagcaaagattgaaaaggaagtaatcagatataaacctttatcatattctcgaacactgtcaagtgtaaaaataataatt |
56052 |
T |
|
| Q |
208 |
tagctacttacaccccctattttcatggttacatccctcaaacatatcaatttaacaatcatacctaaattacccctaacctgat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56053 |
tagctacttacaccccctattttcatggttacatccctcaaacatatcaatttaacaatcatacctaaattacccctaacctgat |
56137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University