View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8130_high_3 (Length: 610)
Name: NF8130_high_3
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Complemental strand, 50922345 - 50921764
Alignment:
| Q |
14 |
gagaagaacttcagaaaagacaagctgaacttgttgttggagagaaggtatactg-tatttcagttaaggaagttctttataattgttaacgaagataca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50922345 |
gagaagaacttcagaaaagacaagctgaacttgttgttggagagaaggtatactgctatttcagttaaggaagttctttataattgttaacgaagataca |
50922246 |
T |
|
| Q |
113 |
gaagtctttggtggccaaatttgcatgacctgtattgctggttctgtactttaatattgcttttcaaacaattgattttggcggtgaaagttgttgcatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50922245 |
gaagtctttggtggccaaatttgcatgacctgtattgctggttctgtactttaatattgcttttcaaacaattgattttggcggtgaaagttgttgcatc |
50922146 |
T |
|
| Q |
213 |
tttgtgtccatgaagtcggtattttcgaacacttacctgcatctggaataacatatttttgtgttatttttcttatcgagtttacattttctgatgttac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50922145 |
tttgtgtccatgaagtcggtattttcgaacacttacctgcatctggaataacatatttttgtgttatttttcttatcgagtttatattttctgatgttac |
50922046 |
T |
|
| Q |
313 |
atgtcctgtaatgtagtattaatgtgatttttggttttaagattgggtttgagtgtaggactgactcaatgccaacttttgaatttgtgattgtattgta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50922045 |
atgtcctgtaatgtagtattaatgtgatttttggttttaagattgggtttgagtgtaggactgactcaatgccaacttttgaatttgtgattgtattgta |
50921946 |
T |
|
| Q |
413 |
tgaaacattgctgaattgttctacnnnnnnnctattaaataattgcaggttataaaagagctaatatcactgcttgatcaacggaaagatgaatcaatag |
512 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50921945 |
tgaaacattgctaaattgttctactttttttctattaaataattgcaggttataaaagagctaatatcactgcttgatcaacggaaagatgaatcagtag |
50921846 |
T |
|
| Q |
513 |
aacaaactttcaaaggtgttgctagccattttcgaaaagtattctctgagcttgtaaaggggggcaatgctgatctggttat |
594 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50921845 |
aacgaactttcaaaggtgttgctagccattttcgaagagtattctctgagcttgtaaaggggggcaatgctgatctggttat |
50921764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 14 - 594
Target Start/End: Original strand, 20742653 - 20743245
Alignment:
| Q |
14 |
gagaagaacttcagaaaagacaagctgaacttgttgttggagagaaggtatactgt-atttcagttaaggaagttctttataattgttaacgaagataca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||| |||| ||||||||||| ||||||||| | |||||||| |
|
|
| T |
20742653 |
gagaagaacttcagaaaagacaagctgaacttgatgcaggagatgaggtatactgtcattccagtataggaagttcttcataattgtttccaaagataca |
20742752 |
T |
|
| Q |
113 |
gaa--gtctttggtggccaaatttgcatgacctgtattgctggttctgtactttaatatt----gcttttcaaacaattgatttt----ggcggtgaaag |
202 |
Q |
| |
|
|| ||||| ||||||| ||||| |||| ||||||||||||||| |||||| || | ||||| ||||| ||||||| ||| ||||| | |
|
|
| T |
20742753 |
aaaaagtcttcaatggccaattttgcctgacaagtattgctggttctgcactttatcatctaaaggttttcgaacaaatgatttttcatggctgtgaatg |
20742852 |
T |
|
| Q |
203 |
ttgttgcatctt-tgtgtccatgaagtcggtattttcgaacacttacctgcatctggaataacatatttttgtgttatttttcttatcgagtttacattt |
301 |
Q |
| |
|
||||||| || |||||| ||||||||| | || | ||| | | |||||||| |||||| || ||| |||||| |||| || | || |||||| ||||| |
|
|
| T |
20742853 |
ctgttgcagtttatgtgtctatgaagtcg-tcttgttgaatattcacctgcatgtggaatgacctatatttgtgatattcttttgattgagtttccattt |
20742951 |
T |
|
| Q |
302 |
tctgatgttacatgtcctgtaatgtagtattaatgtgatttttggttttaagattgggtttgagtgtaggactgactcaatgccaacttttgaatttgtg |
401 |
Q |
| |
|
| |||||| |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
20742952 |
tttgatgtatcatgccctgtaatgtagttttaatgtgatttttggttttaagtttgggtttgagtgtaggactgattcaattccaacttttgcatttgtg |
20743051 |
T |
|
| Q |
402 |
attgtattgtatgaaacattgctgaattgttct-acnnnnnnnctattaaataattgcaggttataaaagagctaatatcactgcttgatcaacggaaag |
500 |
Q |
| |
|
|||||||||||| ||||||||| | || || | || | |||||||||||||| || | ||||||||||||| || ||||||||||| | |
|
|
| T |
20743052 |
attgtattgtatacaacattgctaattttttttgacttttttgccgttaaataattgcagaaaatcagagagctaatatcaagtctagatcaacggaagg |
20743151 |
T |
|
| Q |
501 |
atgaatcaatagaacaaactttcaaaggtgttgctagccattttcgaaaagtattctctgagcttgtaaaggggggcaatgctgatctggttat |
594 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||||||||| |||||| |||||||| ||| | |||||||||| |
|
|
| T |
20743152 |
atgaatcaatagagcgcactttcaaaggtgttgctaggcatttccgagaagtattctctgaacttgtacaggggggccatggtcatctggttat |
20743245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University