View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8130_high_5 (Length: 411)

Name: NF8130_high_5
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8130_high_5
NF8130_high_5
[»] chr1 (1 HSPs)
chr1 (1-411)||(8456309-8456716)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 8456716 - 8456309
Alignment:
Q  1 cagtaatagcaacatcaacaatattatgtatgattactatggaacaaccttgtcttgaacannnnnnnnnnnnnnnnnnnattatcatattaaggaggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||    
T  8456716 cagtaatagcaacatcaacaatattatgtatgattactatggaacaaccttgtcttgaacattcttcttcttcttct---attatcatattaaggaggta 8456620  T
Q  101 tgacaacatgagaatttacctgaaaaagtatttcctttccatctcgcaaaactgcagctggctcttggtgtgaagaaagattgatgacttnnnnnnnnnn 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||              
T  8456619 tgacaacatgagactttacctgaaaaagtatttcctttccatctcgcaaaactgcatctggcccttggtgtgaagaaagattgatgacttaaaaataaaa 8456520  T
Q  201 nnnnnnggattgatgagaagatgagctgaatagtatatagagtaattgaaatatgatctaaccaataacatttaagcttgatcctagtcaaagatacttg 300  Q
          ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8456519 taaaaaggattgatgagaagatgagctcaatagtatatagagtaattgaaatatgatctaaccaataacatttaagcttgatgctagtcaaagatacttg 8456420  T
Q  301 aaaaaagaattaggtaaaggaaattaagcaagtcccctaagttagtagaacaaggaattcaatattcaagattgtataaaatcaattttcaagcactcac 400  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8456419 aaaaaagaattggctaaaggaaattaagcaagtcccctaagttagtagaacaaggaattcaatattcaagattgtataaaatcaattttcacgcactcac 8456320  T
Q  401 ctgagacctcg 411  Q
    |||||||||||    
T  8456319 ctgagacctcg 8456309  T

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