View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8130_low_13 (Length: 274)
Name: NF8130_low_13
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9688054 - 9688310
Alignment:
| Q |
1 |
tgaaatgaagatcacaatttcatttttgtgacaattatgtgtttgttttggagataagaaagattgataattttgatggaaattgaaataaactttacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9688054 |
tgaaatgaagatcacaatttcatttttgtgacaattatgtgtttgttttggagataagaaagattgataattttgatggaaattgaaataaactttacct |
9688153 |
T |
|
| Q |
101 |
tttcagccatggttgtagatcagagatctgatctgaggctcaaaagaaaatgatagagaatgtagacaaaagtgagcagagcaaaaacacaaaatggaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9688154 |
tttcagccatggttgtagatcagagatctgatctgaggctcaaaagaaaatgatagagaatgtagacaaaagtgagcagagcaaaaacacaaaatggaca |
9688253 |
T |
|
| Q |
201 |
gcaaagaaaattcaagaagctattataacttataagcttaatgcataaacatgtagg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9688254 |
gcaaagaaaattcaagaagctattataacttataagcttaatgcataaacatgtagg |
9688310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University