View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8130_low_15 (Length: 266)

Name: NF8130_low_15
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8130_low_15
NF8130_low_15
[»] chr2 (16 HSPs)
chr2 (1-250)||(32534097-32534332)
chr2 (28-250)||(32174104-32174324)
chr2 (28-204)||(32147545-32147719)
chr2 (28-204)||(32156374-32156548)
chr2 (28-170)||(32212171-32212311)
chr2 (28-194)||(32118463-32118628)
chr2 (28-142)||(32182298-32182410)
chr2 (28-196)||(32152314-32152475)
chr2 (104-249)||(32182134-32182279)
chr2 (28-138)||(32157550-32157658)
chr2 (28-142)||(32153370-32153482)
chr2 (28-153)||(2821292-2821414)
chr2 (28-156)||(32207096-32207222)
chr2 (106-226)||(2821410-2821529)
chr2 (28-114)||(32110280-32110364)
chr2 (1-29)||(32211757-32211785)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 32534332 - 32534097
Alignment:
Q  1 gttgttgataatggatacaataaggtatgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctcc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  32534332 gttgttgataatggatacaataaggtatgaaattgtagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctc--c 32534235  T
Q  101 aagccaagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgt 200  Q
    |||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534234 aagccaa------------agaagaggtaaggaatgaagaaaatatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgt 32534147  T
Q  201 actataaaacattaagctaagctaataagtaaatactctcatcctttgat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534146 actataaaacattaagctaagctaataagtaaatactctcatcctttgat 32534097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 32174324 - 32174104
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||| | || ||||  ||||| |||||||||||||| |||||||    
T  32174324 tgaaattgcagaagagctaaccaaggattgtgatgctacagaatgcctacaagaccttataatattcctc--caagcaaagaaaatgatcaaggaagagg 32174227  T
Q  128 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactataaaacattaagctaagctaata 227  Q
    |||  ||||||||||  || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||    
T  32174226 taaaaaatgaagaaaacattaaagaagaaggtgaactaggtagagaaaatatataggtcatgtttggttctgtactgtaaaacattaagctaagctcata 32174127  T
Q  228 agtaaatactctcatcctttgat 250  Q
    |||| | | ||||||||||||||    
T  32174126 agtagacattctcatcctttgat 32174104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 32147719 - 32147545
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||     
T  32147719 tgaaattgcagaagagttaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc--caagccaagaaaatgatcaaggaagaga 32147622  T
Q  128 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtacta 204  Q
    ||| || |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  32147621 taaagattgaagaaaataacaaagaagaaggtgaactaggtagagaaaatatataggccatgtttggttatgtacta 32147545  T

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Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 32156548 - 32156374
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||  ||||||||||  || ||||||     
T  32156548 tgaaattgcagaagagcttacaaaggatgttgatgctacagaatgcctacaagaccttatcaaattc--ctccaagtaaagaaaatgaaaaaggaagaga 32156451  T
Q  128 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtacta 204  Q
    ||| ||| ||||||| | |||||||||||  |||| |||| || ||||||||||||||||||||||||| |||||||    
T  32156450 taaagaaggaagaaaatgtcaaagaagaatctgaactagggagtgaaaatatataggccatgtttggttatgtacta 32156374  T

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Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 32212171 - 32212311
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || || ||||||     
T  32212171 tgaaattgcagaagagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatcc--ctccaagccaagaaaatcatgaaggaagaga 32212268  T
Q  128 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtag 170  Q
    |||  |||||||||| |||||||||||||  |||| |||||||    
T  32212269 taaaaaatgaagaaaatatcaaagaagaacatgaactaggtag 32212311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 32118628 - 32118463
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||| ||| ||||||| ||||||  ||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||||||| ||||||     
T  32118628 tgaaattgctgaagagctaacgaaggattgtgatgctacagaatgcctacaagaccttattgaatcc--ctccaagccaagaaaatgatcaaggaagaga 32118531  T
Q  128 t-aaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttgg 194  Q
    | |  ||||||||||| |||||||||||||  |||| ||| ||||||||||||||||| |||||||||    
T  32118530 tgatagaatgaagaaaatatcaaagaagaacatgaactagatagagaaaatatataggtcatgtttgg 32118463  T

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Target: chr2; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 32182410 - 32182298
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    |||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||| |||||||    
T  32182410 tgaaattggagaagagctaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattc--ctgcaagccaagaaaatgatcaaggaagagg 32182313  T
Q  128 taaggaatgaagaaa 142  Q
    ||| |||||||||||    
T  32182312 taaagaatgaagaaa 32182298  T

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Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 32152475 - 32152314
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||     |||||| ||  |||||||||||||||||||| |||||      
T  32152475 tgaaattgcagaagagctaacaaaggattgtgatgctacagaatgcctacaagacc-----aaatccttc--caagccaagaaaatgatcaaggaagaca 32152383  T
Q  128 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggtt 196  Q
    | |  |||||||||| |||||||| ||||  |||| || ||||||||||||||||||| ||||||||||    
T  32152382 ttaaaaatgaagaaattatcaaaggagaacatgaactatgtagagaaaatatataggctatgtttggtt 32152314  T

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Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 249
Target Start/End: Complemental strand, 32182279 - 32182134
Alignment:
Q  104 ccaagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtact 203  Q
    |||||||||||||| | ||||||  || ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||  |||||||||| |||||     
T  32182279 ccaagaaaatgatcgaggaagagacaaagaatgaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgtacc 32182180  T
Q  204 ataaaacattaagctaagctaataagtaaatactctcatcctttga 249  Q
     |||||||||||||||| || |||||||   | |||||||||||||    
T  32182179 gtaaaacattaagctaaactcataagtagtcattctcatcctttga 32182134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 32157658 - 32157550
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    |||||||| |||| |||| |||||||||  ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||     
T  32157658 tgaaattggagaagagctcacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattc--ctccaagccaagaaaatgatcaaggaagaga 32157561  T
Q  128 taaggaatgaa 138  Q
    | |||||||||    
T  32157560 ttaggaatgaa 32157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 32153482 - 32153370
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    |||||||| |||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||| |  ||||||||||||||||| |||||| | |||     
T  32153482 tgaaattgtagaagagctaacaaaggaggttgatgctgcagaatgcctacaataccttatcaaattc--ctccaagccaagaaaatcatcaaacatgaga 32153385  T
Q  128 taaggaatgaagaaa 142  Q
    ||| |||||||||||    
T  32153384 taaagaatgaagaaa 32153370  T

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Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 2821292 - 2821414
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||| |  |||||||||||| ||| ||| || ||||||     
T  2821292 tgaaattgcagaagagctaacaaaggattgtgatgctacaaaatgcctacaagaccttatcaaattc--ctccaagccaag-aaacgatgaaggaagaga 2821388  T
Q  128 taaggaatgaagaaagtatcaaagaa 153  Q
    ||| |||||||||||  |||||||||    
T  2821389 taaagaatgaagaaaacatcaaagaa 2821414  T

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Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 32207096 - 32207222
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 127  Q
    ||||||||||||| |||||||||||||   |||||| |||||||| ||| |||||||||||||||||  ||||||||||||||||||||||| |||||      
T  32207096 tgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatcc--ctccaagccaagaaaatgatcaaggaagaca 32207193  T
Q  128 taaggaatgaagaaagtatcaaagaagaa 156  Q
    | |  |||||||||| | |||||||||||    
T  32207194 ttaataatgaagaaaatgtcaaagaagaa 32207222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 2821410 - 2821529
Alignment:
Q  106 aagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactat 205  Q
    |||||||||||| | || ||| ||| ||||||||||| |||| ||||||||  |||| ||||||||||||||||||||||||||||||||| |||||||     
T  2821410 aagaaaatgatcgaggatgagataaagaatgaagaaaatatccaagaagaatctgaactaggtagagaaaatatataggccatgtttggttatgtacta- 2821508  T
Q  206 aaaacattaagctaagctaat 226  Q
     ||| | ||||||||||||||    
T  2821509 gaaataataagctaagctaat 2821529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 32110364 - 32110280
Alignment:
Q  28 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatg 114  Q
    |||||||||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||    
T  32110364 tgaaattgcagaagtgttaacaaaggatgttgatgctacagaatgcttacaagaccttatcaaattc--ctccaagccaagaaaatg 32110280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 32211757 - 32211785
Alignment:
Q  1 gttgttgataatggatacaataaggtatg 29  Q
    |||||||||||||||||||||||||||||    
T  32211757 gttgttgataatggatacaataaggtatg 32211785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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