View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8130_low_16 (Length: 255)
Name: NF8130_low_16
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 42321540 - 42321320
Alignment:
| Q |
17 |
ttcttcttgcgggtttatggttcttctcgccatcatctccttaggtaattatcgcatatcctactatattctctttatcactatatattcaaatcttatt |
116 |
Q |
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| T |
42321540 |
ttcttcttgcgggtttatggttcttctcgccatcatctccttaggtaattatcgcatatcctactatcttctctttatcactatatattcaaatcttgtt |
42321441 |
T |
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| Q |
117 |
caccannnnnnnncattgcttttgttgttttagttaagaagggaaagaaaaattgtcggaattctaagatgcatgaaagtaaaggtaacaaatttgaatt |
216 |
Q |
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| T |
42321440 |
caccattttttttcattggttttgttgttttagttaagaagggaaagaaaaattgtcggaattctaagatgcatgaaagtaaaggcaacaaatttgaatt |
42321341 |
T |
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| Q |
217 |
attccatctgaccaacaacga |
237 |
Q |
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|||||| |||||||||||||| |
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| T |
42321340 |
attccaactgaccaacaacga |
42321320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 42323119 - 42323196
Alignment:
| Q |
17 |
ttcttcttgcgggtttatggttcttctcgccatcatctccttaggtaattatcgcatatcctactatattctctttat |
94 |
Q |
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|||||||||||||| | || |||||||| |||||||||||||||||||||||| |||||| ||||| |||||||||| |
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| T |
42323119 |
ttcttcttgcgggtctgtgcttcttctcaccatcatctccttaggtaattatcacatatctcactatcttctctttat |
42323196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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