View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8130_low_2 (Length: 635)
Name: NF8130_low_2
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 84 - 352
Target Start/End: Complemental strand, 39322446 - 39322174
Alignment:
| Q |
84 |
tttgtacactgaccataatatgtgactgattttattttttcgaacaggaatttgcatattaatataatacgctactttgaaattcttgaaggggaaattg |
183 |
Q |
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| T |
39322446 |
tttgtacactgaccataatatgtgaatgattttattttttcgaacaggaatttgcatattaatataatacgctactttgaaattcttgaaggggaaattg |
39322347 |
T |
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| Q |
184 |
tttatcaactattattaaactcaactaaattatcaacctagctagtgcatatt------ttaagtttattttacaattgaaacaagtcatcgttgccacc |
277 |
Q |
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| T |
39322346 |
tttatcaactattattaaactcaactaaattatcaacctagctagtgcatattttaattttaagtttattatacaattgaaacaagtcatcgttgccacc |
39322247 |
T |
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| Q |
278 |
aacaactaatgctacattcaagccgtaaacaaatagaaggnnnnnnnnncacctttcagaatataattttgaaag |
352 |
Q |
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| T |
39322246 |
aacaactaatgctacattcaagcagtaaacaaatagaagg--aaaaaaacacctttcagaatataattttgaaag |
39322174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 405 - 599
Target Start/End: Complemental strand, 39321879 - 39321685
Alignment:
| Q |
405 |
tatgaatcaaacttttcttatccttggatcaaattttaaattacaaaagccgaatcgaagggataacaaaaatgttgagaagaaggaagacaaccaatgt |
504 |
Q |
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| T |
39321879 |
tatgaatcaaatttttcttatccttggatcaaattttaaattacaaaagccgaatcgaagggataacaaaaatgttgagaagaaggaagacaaccaatgt |
39321780 |
T |
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| Q |
505 |
aacattttgaacagaatatctgaatggtgcgctaactagctatttcaatgataaatgtttgtctttttcaagatgtcatgttaagaagtccatga |
599 |
Q |
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| T |
39321779 |
aactttttgaacagactatctgaatggtgcgctaactagctatttcaatgataaatgtttgtctttttcaagatgtcatgttaagaagtccatga |
39321685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 39322492 - 39322444
Alignment:
| Q |
13 |
acctgtgtgccatcctggaactttacttttgcatatttgtaaattattt |
61 |
Q |
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| T |
39322492 |
acctgtgtgccatcctggaactttacttttgcttatttgtaaattattt |
39322444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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