View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8130_low_22 (Length: 239)
Name: NF8130_low_22
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 19372891 - 19373112
Alignment:
| Q |
18 |
taagcactgtaacttatttctactaataccaggttcttaattctaattaaataaggaaacaaatcatgcagtacacacaggcgcgcacacatagatatat |
117 |
Q |
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| T |
19372891 |
taagcactgtaacttatttatactaataccaggttcttaattctaattaaataaggaaacaaatcatgcagtacacacacgcgcgcgcacacagatatat |
19372990 |
T |
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| Q |
118 |
tcaattgtatgagaaatgctactgtgtacaaaaactgtcaaacaaagatggaacggaagaacaattaacaaatcgcggagggagatatacaactattcca |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
19372991 |
tcaattgtatgagaaatgctaccgtgtacaaaaactgtcatacaaagatggaacggtagaacaattaacaaatcacggtgggagatatacaactattcca |
19373090 |
T |
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| Q |
218 |
aagcaagtaaaagcaatctaac |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
19373091 |
aagcaagtaaaagcaatctaac |
19373112 |
T |
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