View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8130_low_23 (Length: 238)
Name: NF8130_low_23
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30751196 - 30751416
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30751196 |
aattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtgaaa |
30751295 |
T |
|
| Q |
101 |
tgataagatgatgagaaatttgtttag-aagagtgagtactgaaccaagctggagacctttgagaataaaagcaatggtagtaggaactcagcaagtagg |
199 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30751296 |
tgataagatgatgagaaattagtttagaaagagtgagtgctgaaccaagctggagacctttgagaataaaagcaatggtagtaggaactcagcaagtagg |
30751395 |
T |
|
| Q |
200 |
tgttcaataattgtgagcaaa |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30751396 |
tgttcaataattgtgagcaaa |
30751416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30061922 - 30062135
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
30061922 |
aattcattttgaaggagagccgtcaaattttcaaacacaactccaagcaaagcgtcggccatt-tttttgtgaaaacaaattaaagagttgaaagtgaaa |
30062020 |
T |
|
| Q |
101 |
tgataagatgatgagaaatttgtttagaa-gagtgagtactgaaccaagctggagacctttgagaataaaagcaatggtagtaggaactcagcaagtagg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30062021 |
tgataagatgatgagaaatttgtttagaaagagtgagtactgaaccaagctggagacctttgagaataaatgcaatggtagtaggaactcagcaagtagg |
30062120 |
T |
|
| Q |
200 |
tgttcaataattgtg |
214 |
Q |
| |
|
||||||||||||||| |
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|
| T |
30062121 |
tgttcaataattgtg |
30062135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30711984 - 30711769
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30711984 |
aattcattttgaaggagagacgtcaagttttcaaaaacaaatccaagcaaagcgtcagccattgtttttgtgaaaacaaattaaagagttg------aaa |
30711891 |
T |
|
| Q |
101 |
tgataagatgatgagaaatttgtttaga-agagtgagtactgaaccaagctggagacctttgagaataaaagcaatggtagtaggaactcag-caagtag |
198 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| |||||| |||||| ||||| || |||| |||||| |
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|
| T |
30711890 |
agataagaagatgagaaattagtttagatagaatgagtgctgaaccaagctggagacctttgaaaataaatgcaatgaaagtagaaagtcagaaaagtag |
30711791 |
T |
|
| Q |
199 |
gtgttcaataattgtgagcaaa |
220 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
30711790 |
gtggtcaataattgtgagcaaa |
30711769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30337081 - 30336886
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtcaaa |
100 |
Q |
| |
|
|||||||||||| |||||| | ||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
30337081 |
aattcattttgatggagagccgtcaaattttcaaacacaactccaagcaaagcgtcggccatt-tttttgtgaaaacaaattaaagagttg------aaa |
30336989 |
T |
|
| Q |
101 |
tgataagatgatgagaaatttgtttaga-agagtgagtactgaaccaagctgga-gacctttgagaataaaagcaatggtagtaggaactcagcaagtag |
198 |
Q |
| |
|
||||||| || |||||||||||||||| ||| ||||| |||||||||||||| ||||||||| |||||| |||||| ||||| || |||||| |||| |
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|
| T |
30336988 |
agataagaagacgagaaatttgtttagatagaatgagtgttgaaccaagctggaggacctttgaaaataaatgcaatgaaagtagaaagtcagcatgtag |
30336889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 30484951 - 30485146
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtcaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
30484951 |
aattcattttgaaggagagatgtcaaattttcgaacacaactccaagcaaagcgcaagccatt-tttttgtgaaaacaaattaaagagttg------aaa |
30485043 |
T |
|
| Q |
101 |
tgataagatgatgagaaatttgtttaga-agagtgagtactgaaccaagctgga-gacctttgagaataaaagcaatggtagtaggaactcagcaagtag |
198 |
Q |
| |
|
||||||| || |||||||||||||||| ||| ||||| |||||||||||||| ||||||||| |||||| |||||| ||||| || |||||| |||| |
|
|
| T |
30485044 |
agataagaagacgagaaatttgtttagatagaatgagtgttgaaccaagctggaggacctttgaaaataaatgcaatgaaagtagaaagtcagcatgtag |
30485143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29873724 - 29873934
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||| |||||||||||||| |||||||||||| | | |
|
|
| T |
29873724 |
aattcattttgaaggagagacatcaaattttcaaacacaactccgagcaaagcgttagccat--tttttgtgaaaaca----aaagagttgaaa---aga |
29873814 |
T |
|
| Q |
101 |
tgataagatgatgagaaatttgtttaga-agagtgagtactgaaccaagctggagacctttgagaataaaagcaatggtagtaggaactcagcaagtagg |
199 |
Q |
| |
|
| | || | |||||||||||||||| || || ||||| || ||| |||| ||||||||||||||||||| |||||| || || || ||| |||| ||| |
|
|
| T |
29873815 |
taagaa-aagatgagaaatttgtttcgatggaatgagtgcttaactaagcaggagacctttgagaataaatgcaatgagagcagcaaatcaacaagcagg |
29873913 |
T |
|
| Q |
200 |
tgttcaataattgtgagcaaa |
220 |
Q |
| |
|
|| ||||||||| |||||||| |
|
|
| T |
29873914 |
tgctcaataattatgagcaaa |
29873934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30675844 - 30675625
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagcca-ttgtttttgtgaaaacaaattaaagagttgaaagtcaa |
99 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| || |||||||||||| ||| ||||||||| || |
|
|
| T |
30675844 |
aattcattttgaaggagagacgtcaaattttcaaacacaactccaagcaaagcgtcagccatttttttttgtgaaaagaaa-gaaagagttg------aa |
30675752 |
T |
|
| Q |
100 |
atgataagatgatgagaaatttgtttaga-agagtgagtactgaac---caagctggagacctttgagaataaaagcaatggtagtaggaactcagc-aa |
194 |
Q |
| |
|
| ||||||| ||| ||||||||||||||| | | ||| | |||||| | | ||||||||||||||||||| |||||| ||||| || ||||| || |
|
|
| T |
30675751 |
aagataagaagattagaaatttgtttagatataatgaatgctgaactattatgaaggagacctttgagaataaatgcaatgaaagtagaaagtcagcaaa |
30675652 |
T |
|
| Q |
195 |
gta-ggtgttcaataattgtgagcaaa |
220 |
Q |
| |
|
||| |||| |||||||||||||||||| |
|
|
| T |
30675651 |
gtagggtggtcaataattgtgagcaaa |
30675625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 30240799 - 30240736
Alignment:
| Q |
157 |
ctttgagaataaaagcaatggtagtaggaactcagcaagtaggtgttcaataattgtgagcaaa |
220 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||| |||||| |||||||||||||||||| |
|
|
| T |
30240799 |
ctttgagaataaatgcaatggtagtaggaagtcggcaactaggtgatcaataattgtgagcaaa |
30240736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30437348 - 30437394
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaag |
47 |
Q |
| |
|
|||||||||||||| ||||| |||||| | ||||||||||||||||| |
|
|
| T |
30437348 |
aattcattttgaagcagagatatcaaattctcaaacacaactccaag |
30437394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 29854861 - 29854938
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaa |
80 |
Q |
| |
|
|||||| |||| ||||||||| ||||| | | |||||||||||| || | |||||| ||||| |||||||||||||||| |
|
|
| T |
29854861 |
aattcactttgtaggagagacgtcaaattctgaaacacaactccgagtaaagcgtcggccat--tttttgtgaaaacaaa |
29854938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 20295138 - 20294979
Alignment:
| Q |
1 |
aattcattttgaaggagagacatcaaactttcaaacacaactccaagcatagcgtcagccattgtttttgtgaaaacaaattaaagagttgaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
20295138 |
aattcattttgaaggagagacgtcaaattttcagacacaactccaagcaaagcgtcggccatt-tttttgtgaaaacaaattaaagagttg-----caaa |
20295045 |
T |
|
| Q |
101 |
tgataagatgatgagaaatttgtttaga-agagtgagtactgaaccaagctggagacctttgagaat |
166 |
Q |
| |
|
||||||| |||||||||||||| || ||| ||||| ||||| |||| |||||||||||||||| |
|
|
| T |
20295044 |
-gataagaagatgagaaatttgtccggatagaatgagtgttgaactaagcaggagacctttgagaat |
20294979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 26709015 - 26709078
Alignment:
| Q |
157 |
ctttgagaataaaa-gcaatggtagtaggaactcagcaagtaggtgttcaataattgtgagcaa |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
26709015 |
ctttgagaataaaatgcaatggtagtaggaagtcagcaagtagttgttcaataattgtgagcaa |
26709078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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