View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8130_low_4 (Length: 563)
Name: NF8130_low_4
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 14 - 547
Target Start/End: Original strand, 3414233 - 3414766
Alignment:
| Q |
14 |
caaactttgatcatgaaacagacaaagggaaaaatagacccaaaccgtccagtacatatgaggcaacaaccaaaaattgggacctcaaaatcaagaatca |
113 |
Q |
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| T |
3414233 |
caaactttgatcatgaagcagacaaagggcaaaatagacccaaaccgtccagtacatatgaggcaacaaccgaaaattgggacctcaaaatcaagaatca |
3414332 |
T |
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| Q |
114 |
gaaaggccaccataaccatgaatagaaaccaaagatctccaaagaatgataatccataaatgcgggtctccaacggcaacaaacataagaatgacgacac |
213 |
Q |
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| T |
3414333 |
gaatggccaccataaccatgaatagaaaccaaagatctccaaagaacgataatccataaatgcgggtctccaacggcaacaaacataagaatgacgacac |
3414432 |
T |
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| Q |
214 |
caaaaataggttgaaagagtgttggagtaaaatatcgtcaaaagggaaatggttaaaacaatccaaatatggtgagacagttatgcagaggatgaatatt |
313 |
Q |
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| T |
3414433 |
caaaaataggttgaaagagtgttggagtaaaatatcgtcaaaagggaaatgattaaaacaatccaaatatggtgagacagttatgcagaggatgaatatt |
3414532 |
T |
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| Q |
314 |
gtcgcgccacatcccaatgaggctacatcttgaatcggaaattcagatttgggggtagagatgcgcaatgacatattaaggttaaagagaggtcatagag |
413 |
Q |
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| T |
3414533 |
gtcgcgccacaacccaatgaggctacatcttgaatcggaaattcagatttgggggtagagatgcgcaatgacatattaaggttaaagagaggtcagagag |
3414632 |
T |
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| Q |
414 |
atatttggtttagatagctacacaaatttgtctctcgatcctaaaatgcttactttagcatgaaagggtcttgaaagatatttgcttaatttaacacaaa |
513 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3414633 |
atatttggtttagataactacacaaatttgtctctcgatcctaaaatgcttactttagcatgaaagggtcttgaaagatatttgcttaatttaacacaaa |
3414732 |
T |
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| Q |
514 |
ccaatctagaatattgatttgaaacagacccttt |
547 |
Q |
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| T |
3414733 |
ccaatctagaatattgatttgaaacagacccttt |
3414766 |
T |
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