View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8130_low_6 (Length: 386)
Name: NF8130_low_6
Description: NF8130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8130_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 146 - 386
Target Start/End: Complemental strand, 33697551 - 33697311
Alignment:
| Q |
146 |
ctccacacataacagggcattaactgctttgttataaattgttcactatattgcacttatattatttgctgatttacaatagattgaccccttaagaccn |
245 |
Q |
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| T |
33697551 |
ctccacacatgacagggcattaactgctttgttataaattgttcagtatattgcacttatattatttgctgatttacaatagattgaccccttaagacct |
33697452 |
T |
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| Q |
246 |
nnnnnngagtattttggtttacgtacacgcttgaattttactatgtcccttaagttggagaaaacaatattcttagcatttggttttattttgtagccct |
345 |
Q |
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| T |
33697451 |
ttttttgagtattttggtttacgtacacgcttgaattttactatgtcccttaagttggagaaaacaatattcttagcatttggttttattttgtagccct |
33697352 |
T |
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| Q |
346 |
ttacggatataaagcaaatccatatggttcttttattcaaa |
386 |
Q |
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| T |
33697351 |
ttacggatataaagcaaatccatatggttcttttattcaaa |
33697311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33697694 - 33697594
Alignment:
| Q |
1 |
cattcatcccatagtgaacaccaagagtcttacattaattatctcataacagaatatattttcattctcatgatctcataaaagaatatattttggcata |
100 |
Q |
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| T |
33697694 |
cattcatcccatagtgaacaccaagagtcttacattaattatctcataacagaatatattttcattctcatgatctcataaaagaatatattttggcata |
33697595 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
33697594 |
a |
33697594 |
T |
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