View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8131_high_1 (Length: 444)
Name: NF8131_high_1
Description: NF8131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8131_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 6475406 - 6475842
Alignment:
| Q |
1 |
ttcgtggtaaatttaactccaatcatttagactttaatgttaacatatttgactcaaagcttcttcnnnnnnn------catatttgactcaaagcataa |
94 |
Q |
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| T |
6475406 |
ttcgtggtaaatttaactccaatcatttagactttaatgttaacatatttgactcaaagcttcttaaaaaaaaaaaaaacatatttgactcaaatgataa |
6475505 |
T |
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| Q |
95 |
gttgaaacttccgccattagtattaggatcta-tttgtgggcactctatatgtatttttatactctatttatgaactttgagatctacctttaacgtcag |
193 |
Q |
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| T |
6475506 |
gttgaaacttccgccattagtattaggatcttgtttgtgggcactctatatgtatttttatactctatttatgaactttgaggtctacttttaacgctag |
6475605 |
T |
|
| Q |
194 |
cgtgacttaactcacctaaacttttatgtata---aaaagtagctagtttgtaatgatnnnnnnnnnnnnttgacaagcaaactacactatttcaatcaa |
290 |
Q |
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| T |
6475606 |
cgtagcttaactcacctaaacttttatgtatttttaaaaatagctagtttgtaatgataaaaacaaaaaattgacaagcaaactgcactatttcaatcaa |
6475705 |
T |
|
| Q |
291 |
agactttttaatggttttgtttcttctaaaatccaaaagtatataaattcagattttacatcgagtaagacaaacagatcgagtaaaccataccaccatc |
390 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6475706 |
agactttttattggttttgtttcttctaaaatccaaaagtatataaattcagattttacaccgagtaagacaaacagatcgagtaaaccataccaccatc |
6475805 |
T |
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| Q |
391 |
atataaccaccaacaaacaactaacacgactagtagt |
427 |
Q |
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| T |
6475806 |
atataaccaccaacaaacaactaacaagactagtagt |
6475842 |
T |
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