View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8131_high_2 (Length: 379)
Name: NF8131_high_2
Description: NF8131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8131_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 21428666 - 21428357
Alignment:
| Q |
1 |
ttctgattctaaatcaaatttctctattccatttaagcttatatttgattttcttttactttgcaggatttaaacttttcatgatttgagaatttcatga |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21428666 |
ttctgattctaaatcaaatttttcgattccatttaagcttatatttgattttcttttactttgcaggatttaaacttttcatgatttgagaatttcatga |
21428567 |
T |
|
| Q |
101 |
aatttgagtagtggaaaattcacatgcatgagtgaaattgaaggattcattgatattttgattgatatattaagctaatgatggcttcagctgctgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21428566 |
aatttgagtagtggaaaattcacatgcatgagtgaaattgaaggattcattgatattttgattgatatattaagctaatgatggcttcagctgctgttaa |
21428467 |
T |
|
| Q |
201 |
tttcgtgaacactacattaaattgggttacatatgctttagatgcaccttctgcaagagctatagtttttggatataattttggtggtaatatttcttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21428466 |
tttcgtgaacactacattaaattgggttacatatgctttagatgcaccttctgcaagagctatagtttttggatataattttggtggtaatatttcttgt |
21428367 |
T |
|
| Q |
301 |
tatggactta |
310 |
Q |
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|||||||||| |
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| T |
21428366 |
tatggactta |
21428357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 21421285 - 21421144
Alignment:
| Q |
1 |
ttctgattctaaatcaaatttctctattccatttaagcttatatttgattttcttttactttgcaggatttaaacttttcatgatttgagaatttcatga |
100 |
Q |
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||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21421285 |
ttctgattctaaatcaaatttttcgattccatttatgcttatatttgattttcttttactttgcaggatttaaacttttcatgatttgagaatttcatga |
21421186 |
T |
|
| Q |
101 |
aatttgagtagtggaaaattcacatgcatgagtgaaattgaa |
142 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21421185 |
aatttgaatagtggaaaattcacatgcatgagtgaaattgaa |
21421144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 21430641 - 21430765
Alignment:
| Q |
1 |
ttctgattctaaatcaaatttctctattccatttaagcttatatttgattttcttttactttgcaggatttaaacttttcatgatttgagaatttcatga |
100 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
21430641 |
ttctgattctaaatcaaatttttcgattccatttaagcttatatttgattttcttttactttgcaggatttaaacttttcatgattttaaaatttcatga |
21430740 |
T |
|
| Q |
101 |
aatttgagtagtggaaaattcacat |
125 |
Q |
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||||||| ||||||||||||||||| |
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| T |
21430741 |
aatttgaatagtggaaaattcacat |
21430765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 30640344 - 30640081
Alignment:
| Q |
37 |
gcttatatttgattttcttttactttgcaggatttaaacttttcatgatttgagaatttcatgaaatttgagtagtggaaaattcacatgcatgagtgaa |
136 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |
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| T |
30640344 |
gcttatatttgattttcttatactttgcaggatttaaacttttcatgatttaagaatttcaa----------tagtggaaaactcacatgcatgagtgaa |
30640255 |
T |
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| Q |
137 |
attgaaggattcattgatattttgattgatatattaagctaatgatggcttcagctgctgttaatttcgtgaacactacattaaattgggttacatatgc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30640254 |
attgaaggattcattgatattttgattgatatattaagctaatgatggcttcagctgctgttaatttcgtgaacactacattaaattgggttacatatgc |
30640155 |
T |
|
| Q |
237 |
tttagatgcaccttctgcaagagctatagtttttggatataattttggtggtaatatttcttgttatggactta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30640154 |
tttagatgcaccttctgcaagagctatagtttttggatataattttggtggtaatatttcttgttatggactta |
30640081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 5618739 - 5618831
Alignment:
| Q |
199 |
aatttcgtgaacactacattaaattgggttacatatgctttagatgcaccttctgcaagagctatagtttttggatataattttggtggtaat |
291 |
Q |
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||||||||||||||||| || ||| ||||||||||||||| |||| ||||||||| ||||| |||||||||||| ||| ||||||||||| |
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| T |
5618739 |
aatttcgtgaacactactatagatttagttacatatgctttacatgctccttctgcacgagctgtagtttttggattcaatattggtggtaat |
5618831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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