View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8131_low_10 (Length: 224)
Name: NF8131_low_10
Description: NF8131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8131_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 4560401 - 4560205
Alignment:
| Q |
11 |
aagcagagaccaaaggtaaagataactatagttttactctttgaaaaatgttggcaaaaaccattaataacatatgattatgaatgcaggaaaagaatca |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560401 |
aagcagaaaccaaaggtaaagataactatagttttactatttgaaaaatgttggcaaaaaccattaataacatatgattatgaatgcaggaaaagaatca |
4560302 |
T |
|
| Q |
111 |
aaagattgcaaaagagaagcaacaattctccacagaatcatcagtaacttctgtctcttcatcatcttgttcatctagcatgacatcctatgaattt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560301 |
aaagattgcaaaagagaagcaacaattctccacagaatcatcagtaacttctgtctcttcatcatcttgttcatctagcatgacatcctatgaattt |
4560205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 5025835 - 5025723
Alignment:
| Q |
89 |
tatgaatgcaggaaaagaatcaaaagattgcaaaagagaagcaacaattctccacagaatc---atcagtaacttctgtctcttcatcatcttgttcatc |
185 |
Q |
| |
|
||||| |||||| ||||||| ||| || ||| |||||| ||||||| |||||||||||| ||||| |||||| | ||||| || ||||||||||| |
|
|
| T |
5025835 |
tatgattgcaggcaaagaatgtgaaggttccaagagagaatcaacaatcctccacagaatcatcatcaggaacttccatgtcttcgtcgtcttgttcatc |
5025736 |
T |
|
| Q |
186 |
tagcatgacatcc |
198 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
5025735 |
tagcatgtcatcc |
5025723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University