View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8131_low_2 (Length: 507)
Name: NF8131_low_2
Description: NF8131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8131_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 492
Target Start/End: Complemental strand, 33239980 - 33239489
Alignment:
| Q |
8 |
acaaataaaaatttgaaatgttatatgaaaaccaaactatttcatatttttatcaaaacacaaagaacagcaagcaaatatttcaaatcctttctggaat |
107 |
Q |
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| T |
33239980 |
acaaataaaaatttgaaatgttatatgaaaaccaaactatttcatatttttatcaaaacacaaagaacagcaagcaaatatttcaaatcctttctggaat |
33239881 |
T |
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| Q |
108 |
ttcgattgaaatatgtgaaaaccaaattaagaactggtttcaaatgccattaaacaatcatgtattatatagaataaatatccaatttggtttcaaatcc |
207 |
Q |
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| T |
33239880 |
ttcgattgaaatatgtgaaaaccaaattaagaactggtttcaaatgccattaaacaatcatgtattatatagaataaatatccaatttggtttcaaatcc |
33239781 |
T |
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| Q |
208 |
aatttgctcgcggctgaattcaatccatcacaaaaaatattatccaaattagtcagtgacattttcatacaagaaacaaattattctctcttttaatttg |
307 |
Q |
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| T |
33239780 |
aatttgctcgcggctgaattcaatccatcagaaaaaatattatccaaattagtcagtgacattttcatacaagaaacaaattagtctctcttttaatttg |
33239681 |
T |
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| Q |
308 |
acacattttcacttagtgactaatttgtcccacaaataaaataaaaatgtcaaaagactaattctgta----taannnnnnnngtctggattgcgggcaa |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||| |
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| T |
33239680 |
acacattttcacttagtgactaatttgtcccacaaataaaataaaaatgtcaaaagactaattttgtatttttttttttttttgtctggattgcggacaa |
33239581 |
T |
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| Q |
404 |
attgtgacgtatc-aattgagtctttatttagttgattatataaaaaccatcaccaagcact--acaatatgaagatgggatcagagaaaag |
492 |
Q |
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| T |
33239580 |
attgtaacgtatcaaattgagtctttatttagttgattatctaaaaaccatcaccaagcactacacaatatgaagatgggattagagaaaag |
33239489 |
T |
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