View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8131_low_8 (Length: 324)
Name: NF8131_low_8
Description: NF8131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8131_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 10483972 - 10483663
Alignment:
| Q |
1 |
attttttgatgataaattggagtttaatttatatataatgtcgatatacaagnnnnnnnatatttgcatcaaatgatgtgttgccacatcaattaataag |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
10483972 |
attttttaatgataaattagagtttaatttatatataatgtcgatatacaagtttttttatatttgcatcaaatgatgtggtgccatatcaactaataag |
10483873 |
T |
|
| Q |
101 |
gtataataagttatatatttctaacttctaaaatgatttaacaaaacaatattagatgtatgtgtagaacttatttacaccgacggtgcaatatttctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10483872 |
gtataataagttatatatttctaacttctaaaatgatttaacaaaacaatattagatgtatgtgtagaacttatttacaccgaccgtgcaatatttctta |
10483773 |
T |
|
| Q |
201 |
ctgtagttatctacaatatggaaaatgaaatagagaaagaaaggattacctatgaaatcaataatgattcgtccatcagaaaatcttccagttgatctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10483772 |
ctgtagttatctacaatatggaaaatgaaatagagaaagaaaggattacctatgaaatcaataatgattcgtccatcagaaaatcttccagttgatctat |
10483673 |
T |
|
| Q |
301 |
tgaaaaaagt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
10483672 |
tgaaaaaagt |
10483663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 10496669 - 10496608
Alignment:
| Q |
249 |
cctatgaaatcaataatgattcgtccatcagaaaatcttccagttgatctattgaaaaaagt |
310 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10496669 |
cctatgaaatcaagaatgattcgaccatcagaaaatcttccagttgatctattgaaaaaagt |
10496608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 10502297 - 10502242
Alignment:
| Q |
245 |
attacctatgaaatcaataatgattcgtccatcagaaaatcttccagttgatctat |
300 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10502297 |
attacctatgaaatcaagaatgattcgaccatcagaaaatcttccagttgatctat |
10502242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 10507571 - 10507516
Alignment:
| Q |
245 |
attacctatgaaatcaataatgattcgtccatcagaaaatcttccagttgatctat |
300 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10507571 |
attacctatgaaatcaagaatgattcggccatcagaaaatcttccagttgatctat |
10507516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 36756982 - 36757016
Alignment:
| Q |
65 |
tgcatcaaatgatgtgttgccacatcaattaataa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36756982 |
tgcatcaaatgatgtgttgccacatcaataaataa |
36757016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 17517394 - 17517426
Alignment:
| Q |
67 |
catcaaatgatgtgttgccacatcaattaataa |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
17517394 |
catcaaatgatgtgttgctacatcaattaataa |
17517426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 55360121 - 55360045
Alignment:
| Q |
68 |
atcaaatgatgtgttgccacatcaattaataaggtataataagttatatatttctaacttctaaaatgatttaacaa |
144 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||| || | |||| ||| |||||| | ||||||| |||||| |
|
|
| T |
55360121 |
atcaaatgatgtgttgtgacgtcaattaataaagtataacaaataatatgtttgtaacttatcaaatgatctaacaa |
55360045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University