View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8132_high_10 (Length: 453)

Name: NF8132_high_10
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8132_high_10
NF8132_high_10
[»] chr6 (3 HSPs)
chr6 (95-419)||(23343553-23343891)
chr6 (7-88)||(15953069-15953150)
chr6 (97-234)||(8779749-8779886)
[»] chr4 (5 HSPs)
chr4 (96-371)||(2031106-2031378)
chr4 (7-91)||(17539709-17539793)
chr4 (7-91)||(17538662-17538744)
chr4 (26-88)||(11913903-11913965)
chr4 (7-50)||(6686635-6686678)
[»] chr8 (4 HSPs)
chr8 (100-234)||(36245241-36245376)
chr8 (7-91)||(13274336-13274420)
chr8 (24-91)||(29275959-29276026)
chr8 (31-97)||(29261157-29261223)
[»] chr5 (1 HSPs)
chr5 (13-91)||(28151273-28151351)
[»] chr3 (1 HSPs)
chr3 (2-91)||(26362729-26362818)
[»] chr7 (1 HSPs)
chr7 (11-91)||(43697480-43697562)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 95 - 419
Target Start/End: Complemental strand, 23343891 - 23343553
Alignment:
Q  95 tatcttaaaagtataaaagaagagcagttctgcaagcaaattgtgctaaaaccctaatgcaaatccttcccaatttaactagcaactcttgtggagggaa 194  Q
    |||||||||| |||||||||||| |||| ||||  ||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  23343891 tatcttaaaaatataaaagaagaacagtcctgcttgcaaattgtgccaaaaccctaatgcaattcatccccaatttaactagcaactcttgtggagggaa 23343792  T
Q  195 aaccctagggtttaaatggggaaatttactttgctgtcctct-atgccatgtgca-------attgccttgggaaccaatttgcttggtgtgtgaa---- 282  Q
    ||||||||||||| ||||||| || |||| ||| |||||| | | ||||||||         || |||||| ||| |||  ||||| |||||| ||        
T  23343791 aaccctagggtttgaatgggggaaattacattgttgtccttttaggccatgtggcgtgtgtgatagccttgtgaagcaagctgctttgtgtgtaaatgaa 23343692  T
Q  283 --ggaaatctgccttgataaatgagcacacgctaaccaagcttttgcaatgatggttgtggcatcaaaccatacacttggctaaggaattgcattaggca 380  Q
      |||||||||||||||||| ||||||||||||||| |||  | ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  23343691 aaggaaatctgccttgataattgagcacacgctaactaaggatgtgcaatgatggttttggcatcaaaccatacacttggctgagcaattgcattaggca 23343592  T
Q  381 tacacttggcaggatgtttgatttgcatttgagatgaat 419  Q
    ||||||||||| |||||||||| || |||||||||||||    
T  23343591 tacacttggcatgatgtttgatctgaatttgagatgaat 23343553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 15953069 - 15953150
Alignment:
Q  7 attctacaacaaaatcaagacagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatt 88  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||| |||||||||||    
T  15953069 attctacaacaaaatcaagaaagataagtttccttgaaacctctcttgatcattctcattaatttaaattcattcttatatt 15953150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 8779886 - 8779749
Alignment:
Q  97 tcttaaaagtataaaagaagagcagttctgcaagcaaattgtgctaaaaccctaatgcaaatccttcccaatttaactagcaactct-tgtggagggaaa 195  Q
    |||||||| |||||||||||||||||||||||  |||| | ||| |||||||||| |||||| |||||| ||||||| ||||| |   | ||||||||||    
T  8779886 tcttaaaaatataaaagaagagcagttctgcagacaaaatctgcaaaaaccctaa-gcaaattcttccccatttaaccagcaaattgatatggagggaaa 8779788  T
Q  196 accctagggttt-aaatggggaaatttactttgctgtcct 234  Q
    |||||| ||||| |||||| |||| |||||||| ||||||    
T  8779787 accctaaggtttaaaatggagaaa-ttactttgttgtcct 8779749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 96 - 371
Target Start/End: Complemental strand, 2031378 - 2031106
Alignment:
Q  96 atcttaaaagtataaaagaagagcagttctgcaagcaaattgtgctaaaaccctaatgcaaatccttcccaatttaactagcaactcttgtggagggaaa 195  Q
    ||||||||| ||||||||||||||||||||||| ||||| | ||| |||||||||| ||||||  |||||||||||||||||||||| ||||||||||||    
T  2031378 atcttaaaaatataaaagaagagcagttctgcaggcaaaatttgcaaaaaccctaa-gcaaatttttcccaatttaactagcaactcatgtggagggaaa 2031280  T
Q  196 accctagggtttaaatggggaaatttactttgctgtcctctatgccatgtgcaattgccttgggaaccaatttgcttggtgtgtgaaggaaatctgcctt 295  Q
    |||||||||||||| || |||||||||||||||||||||  | | ||||||||||||||||||||||||| | |||||  | ||||||||||||| | ||    
T  2031279 accctagggtttaattgtggaaatttactttgctgtccttgaggtcatgtgcaattgccttgggaaccaagtagcttg--gcgtgaaggaaatctacatt 2031182  T
Q  296 gataaatgagcacacgctaaccaagcttttgcaatgatggttgtggcatcaaaccatacacttggctaaggaattg 371  Q
    |||||||||||||| | |||| | ||||  |||||||||||||||||||  |||| ||||||||||| | ||||||    
T  2031181 gataaatgagcacaagttaactaggcttaggcaatgatggttgtggcatttaaccgtacacttggctgaagaattg 2031106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 17539709 - 17539793
Alignment:
Q  7 attctacaacaaaatcaagacagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatttat 91  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17539709 attctacaacaaaatcaagactgataagtttccttgaaacctctcttgattattatcattaacataaattgattcttatatttat 17539793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 17538662 - 17538744
Alignment:
Q  7 attctacaacaaaatcaagacagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatttat 91  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  17538662 attctacaacaaaatcaagacatataagtttccttgaaacctctc--gattattctcattaacataaattgattcttatatttat 17538744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 11913965 - 11913903
Alignment:
Q  26 acagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatt 88  Q
    |||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||||    
T  11913965 acagataagtttccttgaaatctccctagattattctcattaacataaactgattcttatatt 11913903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 6686635 - 6686678
Alignment:
Q  7 attctacaacaaaatcaagacagataagtttccttgaaacctct 50  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  6686635 attcgacaacaaaatcaagacagataagtttccttgaaatctct 6686678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 36245376 - 36245241
Alignment:
Q  100 taaaagtataaaagaagagcagttctgcaagcaaattgtgctaaaaccctaatgcaaatccttcccaatttaactagcaactcttgtggagggaaaaccc 199  Q
    ||||| |||||||| |||||| || ||||| |||||||||| ||||||||||||||| || | |||||||||||||||| ||||||||||||||||||||    
T  36245376 taaaactataaaaggagagcaattatgcaaacaaattgtgccaaaaccctaatgcaactcatccccaatttaactagcagctcttgtggagggaaaaccc 36245277  T
Q  200 tagggttt-aaatggggaaatttactttgctgtcct 234  Q
    |||||||| |||||||||||||||||||| ||||||    
T  36245276 tagggtttaaaatggggaaatttactttgttgtcct 36245241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 13274420 - 13274336
Alignment:
Q  7 attctacaacaaaatcaagacagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatttat 91  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||    
T  13274420 attctacaacaagatcaagacagataagtttccttgaaatctctcttaattattctcattagtataaattgattcttatatttat 13274336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 29275959 - 29276026
Alignment:
Q  24 agacagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatttat 91  Q
    |||||| ||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  29275959 agacaggtaagtttccttaaaatctcccttgattattcccattaacataaattgattcttatatttat 29276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 29261157 - 29261223
Alignment:
Q  31 taagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatttatgtttat 97  Q
    ||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  29261157 taagtttccttgaaatctcccttaattattcccattaacataaattgattcttatatttatatttat 29261223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 28151351 - 28151273
Alignment:
Q  13 caacaaaatcaagacagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatttat 91  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151351 caacaaaatcaagacatataagttaccttgaaacctctcttgattattctcattaacataaattgattcttatatttat 28151273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 26362729 - 26362818
Alignment:
Q  2 atattattctacaacaaaatcaagacagataagtttccttgaaacctctcttgattattctcattaacataaattgattcttatatttat 91  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||   | |||||||| ||||||||||    
T  26362729 atataattctacaacaaaatcaagacagataagtttccttaaaatctctcttgattattctcattatatttaattgatttttatatttat 26362818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 43697480 - 43697562
Alignment:
Q  11 tacaacaaaatcaagacagataagtttccttgaaacctctcttgattattctcatta--acataaattgattcttatatttat 91  Q
    |||||||| |||||  ||||||||||||||||||| ||| |||||||||||  ||||  ||||||||||||||||||||||||    
T  43697480 tacaacaacatcaaagcagataagtttccttgaaatctcccttgattattcatattaacacataaattgattcttatatttat 43697562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University