View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_high_21 (Length: 325)
Name: NF8132_high_21
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 129 - 311
Target Start/End: Complemental strand, 24542684 - 24542499
Alignment:
| Q |
129 |
tatttttgaagaaaacaagttc--acattaacccttttcatatccgtgtgttcttgtttttcctccttttaatatataaattaattttgccattaaagga |
226 |
Q |
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| T |
24542684 |
tatttttgaagaaaacaagttctcacattaacccttttcatatccgtgtgttcttgtttttcctccttttaatatataaattaattttgccattaaagga |
24542585 |
T |
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| Q |
227 |
-aaaatataaaatatgcggaatacctgcaactctagtaagattggatttcaatctagatggaattgttccttcattctgttgttta |
311 |
Q |
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| T |
24542584 |
aaaaatataaaatatgcggattacctgcaactctagtaagattggatttcaatctagatgtaattgttccttcattctgttgttta |
24542499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 24543131 - 24543057
Alignment:
| Q |
19 |
gctttgatactcgaggcttacctacacaccatatagctaagaataaagttgagccacaattactattagtattat |
93 |
Q |
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| T |
24543131 |
gctttgatactcgaggcttacctacacaccatatagctaagaataaagttgagccacaattactattaggattat |
24543057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 24542753 - 24542711
Alignment:
| Q |
85 |
tagtattattaattaccataaaattaattaatgggagattata |
127 |
Q |
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| T |
24542753 |
tagtattattaattaccataaaattaattaatgggagattata |
24542711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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