View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_high_24 (Length: 290)
Name: NF8132_high_24
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 13056159 - 13056305
Alignment:
| Q |
13 |
tcatcacagtttttccctcccactctcactacaagaaatcttgcaatttcacagggatatttgacagggtcgttaacccctggcaaatttccggggggta |
112 |
Q |
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| T |
13056159 |
tcatcacaatttttccctcccactctcactacaagaaattctacaatttcacagggatatttgacagggccattaacacctggcaaatttcccaggggta |
13056258 |
T |
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| Q |
113 |
aagtcagggaaactcctggaaaaacgcatttgtaaagtttaacataa |
159 |
Q |
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| T |
13056259 |
aagtcagggaaacctctggaaaaacgcatttgtagagtttaacataa |
13056305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 272
Target Start/End: Original strand, 13056490 - 13056604
Alignment:
| Q |
158 |
aatgtctaaaaagctaatttcccaagggttaaccctttgaagatgagcttaaacccttgacnnnnnnnccaagggcagcccctcgtttatccactggctt |
257 |
Q |
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||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
13056490 |
aatgtctgaaaagctaattttccaggggttaaccctttgcagatgagcttaaacccttgacttttttcccaagggcagctcctcgtttatccaccggctc |
13056589 |
T |
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| Q |
258 |
ttcttccctctatat |
272 |
Q |
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||||||||||||||| |
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| T |
13056590 |
ttcttccctctatat |
13056604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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