View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_high_25 (Length: 286)
Name: NF8132_high_25
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 42896240 - 42895986
Alignment:
| Q |
16 |
ataaactcgatgcatggtgaaaaaacatatcatcaaacatgaaactgaaactacaatcctcaaacaacaaaccatcctgctgacacagacactagacgat |
115 |
Q |
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| T |
42896240 |
ataaactcgatgcatggtgaaaaaacatatcatcaaacatgaaactgaaactacaatcctcaaacaacaaaccatcctgctgacacagacactagacgat |
42896141 |
T |
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| Q |
116 |
acatatacatcgatacggtgacaccgatgaaaaatggataaaatgatttaattgaatgtaatgtgctagtgttggacaccggacacgcgtttgattggat |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42896140 |
acatatacatcgatgcggtgacaccgatgaaaaatggataaaatgatttaattgaatgtaatgtgccagtgttggacaccggacacgcgtttgattggat |
42896041 |
T |
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| Q |
216 |
gtgtcagcagtacaaagcttctgtccctccaaaaactagaaagaaacaaacatag |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42896040 |
gtgtcagcagtacaaagcttctgtccctccaaaaactagaaagaaacaaacatag |
42895986 |
T |
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