View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_high_35 (Length: 239)
Name: NF8132_high_35
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 52599925 - 52599705
Alignment:
| Q |
19 |
ggtggagctgtctcctccggtaattcttctgttttgccactgccacgtctaaaacgcttccagaatacaaagagaataatgagcaatatgacaagcacta |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52599925 |
ggtggagctgtctcctccggtagttcttctgttttgccactgccacgtctaaaacgcttccagaatacaaagagaataatgagcaatatgacaagcacta |
52599826 |
T |
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| Q |
119 |
cgatcactccaaggaaaaagtacaaagctcctgagacgtggtgcggcgaggaaggaggtgtctctgccacatcacaagatttcattcattatttatcaaa |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52599825 |
cgatcactccgaggaaaaagtacaaagctcctgagacgtggtgcggcgatgaaggaggtgtctctgccacatcacaagatttcattcattattgatcaaa |
52599726 |
T |
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| Q |
219 |
gaaaaattaacacgaaaaaac |
239 |
Q |
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||||||||||||||||||||| |
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| T |
52599725 |
gaaaaattaacacgaaaaaac |
52599705 |
T |
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