View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_high_36 (Length: 235)
Name: NF8132_high_36
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 22773940 - 22773750
Alignment:
| Q |
30 |
gccgccgttcatcaggtttgttacttcttaaaatttttaaagtctgtttgatatagtgaccttcgcataactagcattcattttaatattgagtgtcagt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22773940 |
gccgccgttcatcaggtttgttacttcttaaaatttttaaagtctgtttgatatagtgaccttcgcataactagcattcattttaatattgagtgtcagt |
22773841 |
T |
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| Q |
130 |
actgcatatgttttagaattaattttgtatgagtatcattttagttaaaagtttggtttatgttcactactgcgtcatctgaattaaatgt |
220 |
Q |
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| T |
22773840 |
actgcatatgttttagaattaattttgtatgagtatcattttatttaaaagtttggtttatgttcactactgcgtcatctgaattaaatgt |
22773750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 26081972 - 26081929
Alignment:
| Q |
177 |
aaagtttggtttatgttcactactgcgtcatctgaattaaatgt |
220 |
Q |
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| T |
26081972 |
aaagtttggtttatgttcactactgcgtcatctaaattaaatgt |
26081929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 51270234 - 51270029
Alignment:
| Q |
14 |
ttcactgtataccgctgccgccgttcatcaggtttgttacttcttaaaatttttaaagtctgtttgatatagtgaccttcgcataactagcattcatttt |
113 |
Q |
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| T |
51270234 |
ttcactgtaaaccgccgccaccgttcatcaggtttgttacttcttaaaatttttaaagtctgtttgatatagcgaccttcgcataactagcattcatttt |
51270135 |
T |
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| Q |
114 |
aatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttagttaaaagtttggtttatgttcactactgcgtcatctgaat |
213 |
Q |
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| T |
51270134 |
aatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttagttaaaag-ttggtttatgttcactactgcgtcatctgaat |
51270036 |
T |
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| Q |
214 |
taaatgt |
220 |
Q |
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||||||| |
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| T |
51270035 |
taaatgt |
51270029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 52476664 - 52476485
Alignment:
| Q |
14 |
ttcactgtataccgctgccgccgttcatcaggtttgttacttcttaaaatttttaaagtctgtttgatatagtgaccttcgcataactagcattcatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52476664 |
ttcactgtataccgctgccgccgttcatcaggttagttacttcttaaaatttttaaagtctatttgatatagtgaccttcgcataactagcattcatttt |
52476565 |
T |
|
| Q |
114 |
aatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttagttaaaagtttggtttatgtt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52476564 |
aatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttaattaaaagtttggtttatgtt |
52476485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 15856483 - 15856422
Alignment:
| Q |
159 |
tgagtatcattttagttaaaagtttggtttatgttcactactgcgtcatctgaattaaatgt |
220 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15856483 |
tgagtatcattttaattaaaagtttggtttatgttaactactgcgtcatctgaattaaatgt |
15856422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 17560036 - 17559996
Alignment:
| Q |
14 |
ttcactgtataccgctgccgccgttcatcaggtttgttact |
54 |
Q |
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| T |
17560036 |
ttcactgtataccgctgccgccgttcatcaggtttgttact |
17559996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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