View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8132_high_4 (Length: 634)

Name: NF8132_high_4
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8132_high_4
NF8132_high_4
[»] chr4 (1 HSPs)
chr4 (1-627)||(48003551-48004170)


Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 48003551 - 48004170
Alignment:
Q  1 taaaaagctaagcatatgaattgtaatgttgtcctctaatttgactctgaaaacattcaatgacttcagtcgaaacgtttgttatcaaaggcttgcaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  48003551 taaaaagctaagcatatgaattgtaatgttgtcctctaatttgactctgaaaacattcaatgacttcagtcgaaacatttgttatcaaaggcttgcaggc 48003650  T
Q  101 taccaagcttctttttgcaaacgatttccgtaacttaagcaaggaacgcatactaactcaa--ccacacaaaaatacatttgcaaacatgcaactcttca 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |    
T  48003651 taccaagcttctttttgcaaacgatttccgtaacttaagcaaggaacgcatactaactcaaaaccacacaaaaatacatttgcaaacatgcaactcttta 48003750  T
Q  199 atgttttactctatactgctttcaactttttcttcaagtttcaacaactaaagtactaaacacacaattttgggagtttctatcccctgcacttctaaaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48003751 atgttttactctatactgctttcaactttttcttcaagtttcaacaactaaagtactaaacacacaattttgggagtttctatcccctgcacttctaaaa 48003850  T
Q  299 aatcacacatgtttctcaaagtatacttccagatgtcaaaaaattgtgtttttctaatagcatacttccaaagtgttgtgggattgggaaaagaaacgcc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  48003851 aatcacacatgtttctcaaagtatacttccagatgtcaaaaaattgtgtttttctaatagtatacttccaaagtgttgtgggattgggaaaagaaacacc 48003950  T
Q  399 catattataattcattcggtcacaactcacaaccattgattgttggatatgttgcagatatgttgctatccatttaacaaaaggaaatactgtatatttc 498  Q
    || ||||||||||||||||||||||||||||| ||||||      ||| |||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  48003951 caaattataattcattcggtcacaactcacaaacattga------gat-tgttg--gatatgttgctatccatttaacaaaaggaaatactgtatatttc 48004041  T
Q  499 cttgttagcagaacaccagcagtttggtgattagattaaatcacagataaaagaactatttatctgaagtgaccctaatcttggtaaattccaaatgcct 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48004042 cttgttagcagaacaccagcagtttggtgattagattaaatcacagataaaagaactatttatctgaagtgaccctaatcttggtaaattccaaatgcct 48004141  T
Q  599 tttgttccaaaatttacatgtgatgatgt 627  Q
    ||||||||||||||||||||| |||||||    
T  48004142 tttgttccaaaatttacatgtcatgatgt 48004170  T

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