View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8132_low_1 (Length: 898)
Name: NF8132_low_1
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 618; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 16 - 685
Target Start/End: Complemental strand, 25481033 - 25480364
Alignment:
| Q |
16 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaagattttta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25481033 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaagaatgatacacattttgcttattgttaattgtgctaagattttta |
25480934 |
T |
|
| Q |
116 |
ctccaagatggttctacaagagagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggcga |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
25480933 |
ctccaagatggttctacaagatagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggaaa |
25480834 |
T |
|
| Q |
216 |
tggtggaggcaaacctttcctcaagaacaataattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttctctaggttacaggt |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25480833 |
tgttggaggcaaacctttcctcaagaacaacaattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttctctaggttacaggt |
25480734 |
T |
|
| Q |
316 |
tcaggaagtctgacaacaatgttagttatgagcaattcctgctcctgtttctgtcaattcggaatccaacaccattgctcctctgataagcatcactcca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
25480733 |
tcaggaagtctgacaacaatgttagttatgagcaattcctgctcctgtttctgtcaattcggaatccagcaccattgctcctctgataagcatcactcca |
25480634 |
T |
|
| Q |
416 |
gaacaattgcaaggacttttgattcatttatctcccattgttaatgctatctccattaatcttgttagttttcatcacatcaatgttgcatcttcttctc |
515 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25480633 |
aaacaattgcaaggacttttgattcttttatctcccattgttaatgctatctccattaatcttgttagttttcatcacatcaatgttgcatcttcttctc |
25480534 |
T |
|
| Q |
516 |
aaggtaaggtttctacttgctgaattgtcgatgcaaaagtgagccaccaaccatactacctcttctttccatagggtcaaatacaatccgagactcacca |
615 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
25480533 |
aaggtaaggtttctacttggtgaattgtcaatgcaaaagtgagccaccaaccatactacctcttctttccatagggtcaaatacaatctgagactcacca |
25480434 |
T |
|
| Q |
616 |
gacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaacctagttgaa |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25480433 |
gacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaacctagttgaa |
25480364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 25863000 - 25863385
Alignment:
| Q |
16 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaagattttta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25863000 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaagattttta |
25863099 |
T |
|
| Q |
116 |
ctccaagatggttctacaagagagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggcga |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
25863100 |
ctccaagatggttctacaagaaagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggcaa |
25863199 |
T |
|
| Q |
216 |
tggtggaggcaaacctttcctcaagaacaataattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttctctaggttacaggt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25863200 |
tggtggaggcaaacctttcctcaagaac---aattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttctctaggttacaggt |
25863296 |
T |
|
| Q |
316 |
tcaggaagtctgacaacaatgttagttatgagcaattcctgctcctgtttctgtcaattcggaatccaacaccattgctcctctgataa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
25863297 |
tcaggaagtctgacaacaatgttagttatgagcaattcctgctcctgtttctgtcaattcggaatctagcaccattgctcctctgataa |
25863385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 364 - 685
Target Start/End: Original strand, 25863415 - 25863741
Alignment:
| Q |
364 |
ttctgtcaattcggaatccaacaccattgctcc----tctgataa-gcatcactccagaacaattgcaaggacttttgattcatttatctcccattgtta |
458 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | | | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25863415 |
ttctgtcaattcggaatccaaaaccattgctctggagttttacaatgcatcactccagaacaattgcaaggacttttgattcttttatctcccattgtta |
25863514 |
T |
|
| Q |
459 |
atgctatctccattaatcttgttagttttcatcacatcaatgttgcatcttcttctcaaggtaaggtttctacttgctgaattgtcgatgcaaaagtgag |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
25863515 |
atgctatctccattaatcttgttagttttcatcacatcaatgttgcatcttcttctcaaggtaaggtttctacttggtgaattgtcaatgcaaaagtgag |
25863614 |
T |
|
| Q |
559 |
ccaccaaccatactacctcttctttccatagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaa |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25863615 |
ccaccaaccatactacctcttctttccatagggtcaaatacaatctgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaa |
25863714 |
T |
|
| Q |
659 |
gcattgtaaaactaaaacctagttgaa |
685 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
25863715 |
gcattgtaaaacttaaacctagttgaa |
25863741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 328 - 530
Target Start/End: Original strand, 25608359 - 25608561
Alignment:
| Q |
328 |
acaacaatgttagttatgagcaattcctgctcctgtttctgtcaattcggaatccaacaccattgctcctctgataagcatcactccagaacaattgcaa |
427 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
25608359 |
acaacaatgttagttatgagcaatccctgcttctgtttctgtcaattcggattccagcaccattgcttctctgataagcaacactccaaaacaattgcaa |
25608458 |
T |
|
| Q |
428 |
ggacttttgattcatttatctcccattgttaatgctatctccattaatcttgttagttttcatcacatcaatgttgcatcttcttctcaaggtaaggttt |
527 |
Q |
| |
|
||||||||||||| || |||||| | |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
25608459 |
ggacttttgattctttcatctcctactgttaatgctatttccattaatcttgttagttctcatcacatcgatgttgcatcttcttctagaggtaaggttt |
25608558 |
T |
|
| Q |
528 |
cta |
530 |
Q |
| |
|
||| |
|
|
| T |
25608559 |
cta |
25608561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 25606018 - 25606107
Alignment:
| Q |
18 |
atcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25606018 |
atcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaa |
25606107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 584 - 695
Target Start/End: Original strand, 25606231 - 25606342
Alignment:
| Q |
584 |
ccatagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaacctagttg |
683 |
Q |
| |
|
||||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25606231 |
ccataggatgaaatacaatccgagactcactatgcatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaacctagttg |
25606330 |
T |
|
| Q |
684 |
aatggctggtaa |
695 |
Q |
| |
|
||||||||||| |
|
|
| T |
25606331 |
tatggctggtaa |
25606342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 748 - 824
Target Start/End: Original strand, 25606452 - 25606528
Alignment:
| Q |
748 |
actctaaggaagtcgatatttgtaccaattcatttttgtcagtatgaaaaccgcctgttgtgctgtttgctgctctg |
824 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
25606452 |
actctaaggaagtcgatatttgtaccaattcatttttgtcagtatgaacaccgcctgttgggctgtttgctgctctg |
25606528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 25607846 - 25607939
Alignment:
| Q |
16 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatc----taaaggatgatacacattttgcttattgttaattgtgct |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
25607846 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaattaaagaatgatacacattttgtttattgttaattgtgct |
25607939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 25888740 - 25888797
Alignment:
| Q |
16 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaagga |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25888740 |
acatcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaagga |
25888797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 25608242 - 25608293
Alignment:
| Q |
215 |
atggtggaggcaaacctttcctcaagaacaataattccggtagattctgcac |
266 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
25608242 |
atggtggaggcaaacctttcctcaagaagaacaattctggtagattctgcac |
25608293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 840 - 880
Target Start/End: Original strand, 1548419 - 1548459
Alignment:
| Q |
840 |
ttgtcaactctagagagatgagcaacttcaatgttagcctt |
880 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1548419 |
ttgtcaactgtagagagatgagcaacttcaatgttagcctt |
1548459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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