View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_10 (Length: 476)
Name: NF8132_low_10
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Original strand, 32898904 - 32899342
Alignment:
| Q |
21 |
gatttagaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagtgaacgagtcaccttaattatcttcagtgtcattttggaaaatata |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898904 |
gatttagaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatcttcagtgtcattttggaaaatata |
32899003 |
T |
|
| Q |
121 |
cattattcttccaccaacatgtcatgcactttttctcctgcatataaggaactcaattagtcacctctttcccataccttcacttgactaaaaaatatat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32899004 |
cattattcttccaccaacatgtcatgcactttttctcctgcatataaggaactcaattagtaacctctttcccataccttcacttgactaaaaaatatat |
32899103 |
T |
|
| Q |
221 |
aaccaatcatattctttttctaacaatattattcatattcattcattcatcaacaaatgtcaacctcttggactgcaaggcagaacaaactgtttgaaca |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32899104 |
aaccaatcatattctttttctaacaatattattcatattcattcattcatcaacaaatggcaacctcttggactgcaaggcagaacaaactgtttgaaca |
32899203 |
T |
|
| Q |
321 |
agcattggctttatatgatagagaaactcctgaaagatggcacaatgttgccaaagtggttggaaaatcagttgaagatgttaagagtcactatgagatc |
420 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32899204 |
agcattggctttatatgacagggaaactcctgaaagatggcacaatgtggccaaagtggttggaaaatcagttgaagatgttaagagtcactatgagatc |
32899303 |
T |
|
| Q |
421 |
ctcaaagaagatgttcaacgtattgagcatggccatatc |
459 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32899304 |
ctcaaagaagatgttcaacgtattgagcatggccatatc |
32899342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Original strand, 32880032 - 32880472
Alignment:
| Q |
21 |
gatttagaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagtgaacgagtcaccttaattatcttcagtgtcattttggaaaatata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32880032 |
gatttagaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatcttcagtgtcattttggaaaataaa |
32880131 |
T |
|
| Q |
121 |
cattattcttccaccaacatgtcatgcactttttctcctgcatataaggaactcaattagtcacctctttcccataccttcacttgactaaaaaatatat |
220 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |
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| T |
32880132 |
cattattcttccaccaacatgtcatgcactttttctcctgcatataaggaactcaattagtcacctctttcccatactttcacttgactaaaaaacaaat |
32880231 |
T |
|
| Q |
221 |
aaccaat--catattctttttctaacaatattattcatattcattcattcatcaacaaatgtcaacctcttggactgcaaggcagaacaaactgtttgaa |
318 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32880232 |
aaccaaaaccatattctttttctaacaatattattcatattcattcattcatcaacaaatggcaacctcttggactgcaaggcagaacaaactgtttgaa |
32880331 |
T |
|
| Q |
319 |
caagcattggctttatatgatagagaaactcctgaaagatggcacaatgttgccaaagtggttggaaaatcagttgaagatgttaagagtcactatgaga |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32880332 |
caagcattggctttatatgatagagaaactcctgaaagatggcacaatgtggccaaagtggttggaaaatcagttgaagatgttaagagtcactatgaga |
32880431 |
T |
|
| Q |
419 |
tcctcaaagaagatgttcaacgtattgagcatggccatatc |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32880432 |
tcctcaaagaagatgttcaacgtattgagcatggccatatc |
32880472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 25 - 459
Target Start/End: Original strand, 32884865 - 32885299
Alignment:
| Q |
25 |
tagaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagtgaacgagtcaccttaattatcttcagtgtcattttggaaaatatacatt |
124 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32884865 |
tagaatctcctcct-cttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatcttcagtgtcattttggaaaatatacatt |
32884963 |
T |
|
| Q |
125 |
attcttccacc-aacatgtcatgcactttttctcctgcatataaggaactcaattagtcacctctttcccataccttcacttgactaaaaaatatataac |
223 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32884964 |
attcttccaccgaacatgtcatgcactttttctcctgcatataaggaactcaattagtaacctctttcccataccttcacttgactaaaaaatatataac |
32885063 |
T |
|
| Q |
224 |
caatcatattctttttctaacaatattattcatattcattcattcatcaacaaatgtcaacctcttggactgcaaggcagaacaaactgtttgaacaagc |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885064 |
caatcatattctttttctaacaatattattcatattcattcattcatcaacaaatggcaacctcttggactgcaaggcagaacaaactgtttgaacaagc |
32885163 |
T |
|
| Q |
324 |
attggctttatatgatagagaaactcctgaaagatggcacaatgttgccaaagtggttggaaaatcagttgaagatgttaagagtcactatgagatcctc |
423 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885164 |
attggctttatatgacagggaaactcctgaaagatggcacaatgtggccaaagtggttggaaaatcagttgaagatgttaagagtcactatgagatcctc |
32885263 |
T |
|
| Q |
424 |
aaagaagatgttcaacgtattgagcatggccatatc |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
32885264 |
aaagaagatgttcaacgtattgagcatggccatatc |
32885299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 287 - 452
Target Start/End: Original strand, 32867154 - 32867319
Alignment:
| Q |
287 |
cttggactgcaaggcagaacaaactgtttgaacaagcattggctttatatgatagagaaactcctgaaagatggcacaatgttgccaaagtggttggaaa |
386 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| ||| |||||| |||||||||||||| |||| || | ||||| ||||||||||| |||| ||||| |
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| T |
32867154 |
cttggactccaaggcaaaacaaacaatttgaaagagctttggctatatatgatagagaatctccagataagtggcagaatgttgccaacatggtgggaaa |
32867253 |
T |
|
| Q |
387 |
atcagttgaagatgttaagagtcactatgagatcctcaaagaagatgttcaacgtattgagcatgg |
452 |
Q |
| |
|
|||||||||||||||||| || || ||||| |||||||||||||||||| || ||||||||||| |
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|
| T |
32867254 |
atcagttgaagatgttaaaaggcattatgaaatcctcaaagaagatgttaggcgcattgagcatgg |
32867319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 428
Target Start/End: Complemental strand, 7859093 - 7858954
Alignment:
| Q |
289 |
tggactgcaaggcagaacaaactgtttgaacaagcattggctttatatgatagagaaactcctgaaagatggcacaatgttgccaaagtggttggaaaat |
388 |
Q |
| |
|
||||| |||||||| |||||||| |||||| | ||| | ||| |||||||||| ||||| ||||| || ||||||||||| || |||||||| ||||||| |
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| T |
7859093 |
tggacagcaaggcaaaacaaactatttgaagaggcacttgctatatatgatagggaaacacctgacaggtggcacaatgtggctaaagtggtcggaaaat |
7858994 |
T |
|
| Q |
389 |
cagttgaagatgttaagagtcactatgagatcctcaaaga |
428 |
Q |
| |
|
| ||||| |||||||| || ||||||||||| |||||||| |
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|
| T |
7858993 |
ctgttgaggatgttaaaaggcactatgagatactcaaaga |
7858954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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