View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_11 (Length: 472)
Name: NF8132_low_11
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 38444528 - 38444096
Alignment:
| Q |
13 |
aatattgtgcatcatattttcaggttggatttaatatatagaaatagctatatgatctacacaaaagactacttggttgatactagacaggtaagatgaa |
112 |
Q |
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| T |
38444528 |
aatattgtgcatcatattttcaggttggatttaatatatagaaatagctatacgatctacacctaagactacttggttgatactagacaggtaagatgaa |
38444429 |
T |
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| Q |
113 |
atcaagctgatcaatgaaattacatttacaatgaatcatcaaattaattaactacaacctcatatcaatgaaaattgtaccttaattggtcacaagaata |
212 |
Q |
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| T |
38444428 |
atcaaactgatcaatgaaattacatttacaatgaatcatcaaattaattaactacaacctcatatcaatgaaaattgtaccttaattggtcacaagaata |
38444329 |
T |
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| Q |
213 |
aggagttctaatagaattatatgcgtaaaagaggaccaatagacattact-ccccaacagcaaagaatatc--atagaaattctgaaacatatgctgaca |
309 |
Q |
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| T |
38444328 |
aggagttctaatagaat--tatgcgtataagaggaccaatagacattactcccccaaccgcaaacaatatcatatagaaattctgaaacatatgctgaca |
38444231 |
T |
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| Q |
310 |
gtatcacaccacatgatattttctccaatatatagtaagttattaacggctttaggttttttaatctcataatcaactttagggttcatttgttaaagaa |
409 |
Q |
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| T |
38444230 |
gtatcacaccacatgacattttctcca----ataataagttattaaaggttttaggttttt--------taatcaactttaggtttcatttgttaaagaa |
38444143 |
T |
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| Q |
410 |
atttcacttccataacatgcattaatttcatttattatgtgttaatt |
456 |
Q |
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| T |
38444142 |
atttcacttccataacatgcattgatttcatttgttatgtgttaatt |
38444096 |
T |
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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 53349813 - 53349910
Alignment:
| Q |
205 |
caagaataaggagttctaatagaattatatgcgtaaaagaggaccaatagacattactccccaacagcaaagaatatc--atagaaattctgaaacatat |
302 |
Q |
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| T |
53349813 |
caagaataaggagttccaatagaattata--cgtataagaggaccaatagac---actccccaacaacaaagaagatcatatagaagttctgaaacatat |
53349907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 53349638 - 53349702
Alignment:
| Q |
76 |
aaagactacttggttgatactagacaggtaagatgaaatcaagctgatcaatgaaattacattta |
140 |
Q |
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| T |
53349638 |
aaaggctacttggttgatactagacaggtaagatgaaatcaaactcatcaatcaaattactttta |
53349702 |
T |
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