View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_12 (Length: 470)
Name: NF8132_low_12
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_12 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 3701771 - 3702229
Alignment:
| Q |
13 |
aatatcatcagaaaacaaatcaaacatatactttctgacagaacaaagtccgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaatac |
112 |
Q |
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| T |
3701771 |
aatatcatcagaaaacaaatcaaacatatactttctgacagaacaaagtccgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaatac |
3701870 |
T |
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| Q |
113 |
cagatcatttcttttgaacctgcaacaagaagacaagtgagtattttctctaatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatat |
212 |
Q |
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| T |
3701871 |
cagatcatttcttttgaacctgcaacaagaagacaagtgagtattttctctaatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatat |
3701970 |
T |
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| Q |
213 |
atccataaactaagctgacaacattttgaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatctctatgttttg |
312 |
Q |
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| T |
3701971 |
atccataaactaagctgacaacattttgaactacttttcatgaactgaaatctttatttccacataaaagaaaaaaatctgaaagaatctctatgttttg |
3702070 |
T |
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| Q |
313 |
attaaataaaactagaaaacattttnnnnnnnttaataactaatcactttactaagattcc--tgtgtgtaagtcaatatagctgcttctagcatccaac |
410 |
Q |
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| T |
3702071 |
attaaataaaacttgaaaacatttt-aaaaaattaataactaatcactttactaagattcctatgtgtgtaagtcaatatagctgcttctagcatccaac |
3702169 |
T |
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| Q |
411 |
ataaaagtcggttggtaaagcagccactagacacaacacagaagagaaatcaaaactttc |
470 |
Q |
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| T |
3702170 |
ataaaagtcggttggtaaagcagccactagacacaacacagaagagaaatcaaaactttc |
3702229 |
T |
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Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 6601772 - 6601314
Alignment:
| Q |
13 |
aatatcatcagaaaacaaatcaaacatatactttctgacagaacaaagtccgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaatac |
112 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6601772 |
aatatcatcagaaaacagatcaaacatatactttctgacagaagaaagtctgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaatac |
6601673 |
T |
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| Q |
113 |
cagatcatttcttttgaacctgcaacaagaagacaagtgagtattttctctaatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatat |
212 |
Q |
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| T |
6601672 |
cagatcatttcttttgaacctgcaacaagaagacaagtgattattttctcttatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatat |
6601573 |
T |
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| Q |
213 |
atccataaactaagctgacaacattttgaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatctctatgttttg |
312 |
Q |
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| T |
6601572 |
atctataaactaagctgacaacattttcaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatccctatgttttg |
6601473 |
T |
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| Q |
313 |
attaaataaaactagaaaacattttnnnnnnnttaataactaatcactttactaagattcc--tgtgtgtaagtcaatatagctgcttctagcatccaac |
410 |
Q |
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| T |
6601472 |
actaaattaaactagaaaacatttt-aaaaaattaataactaatcactttattaagattcctatgtgtgcaagtcaatatagctgcttctagcatccaac |
6601374 |
T |
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| Q |
411 |
ataaaagtcggttggtaaagcagccactagacacaacacagaagagaaatcaaaactttc |
470 |
Q |
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| T |
6601373 |
aaaaaagtcggttggtaaagcagccacttgacacaacacagaagagaaatcaaaactttc |
6601314 |
T |
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