View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_15 (Length: 416)
Name: NF8132_low_15
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 1011683 - 1012067
Alignment:
| Q |
15 |
aacaaaacgattgtgaaggttgttcttgttgcgtctttatatccagaatacggtgataatttaaagacgatgtatacgaataaatcaacttcttcagggg |
114 |
Q |
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| T |
1011683 |
aacaaaacgattgtgaaggttgttcttgttgcgtctttatatccagaatacggtgataatttaaagacgatgtatacgaataaatcaacttcttcagggg |
1011782 |
T |
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| Q |
115 |
aaataatagaagttcatcaagcaagtggtgaagagcaacaaaaatttaatgataataagcataatatgaaggcttgggttgatatgtatctactaagttt |
214 |
Q |
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| T |
1011783 |
aaataatagaagttcatcaagcaagtggtgaagagcaacaaaaatttaatgataataagcataatatgaaggcttgggttgatatgtatctactaagttt |
1011882 |
T |
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| Q |
215 |
atctgatgtgttggttactacttctttgtctacttttggatatgttgctcaaggcttgggaaatttgaggccatggcttctatacaagataataagtaat |
314 |
Q |
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| T |
1011883 |
atctgatgtgttggttactacttctttgtctacttttggatatgttgctcaaggcttgggaaatttgaggccatggcttctatacaagataataagtaat |
1011982 |
T |
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| Q |
315 |
gacactcattttccagcttgtgaaagagagttctcaatggagccatgttatcatgctcctcctaagcattactgtagtggaaagc |
399 |
Q |
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| T |
1011983 |
gacactcattttccagcttgtgaaagagagttctcaatggagccatgttatcatgctcctcctaagcattactgtagtggaaagc |
1012067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 1029805 - 1030084
Alignment:
| Q |
29 |
gaaggttgttcttgttgcgtctttatatccagaatacggtgataatttaaagacgatgtatacgaataaatcaacttcttcaggggaaataatagaagtt |
128 |
Q |
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| T |
1029805 |
gaaggttgttcttgtggcgtctttatatccacaatatggcgataatttaaagatgatgtatatgaataaatcaaaagttattggggaagtaattgaggtt |
1029904 |
T |
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| Q |
129 |
catcaagcaagtggtgaagagcaacaaaaatttaatgataat-----aagcataatatgaaggcttgggttgatatg--tatctactaagtttatctgat |
221 |
Q |
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| T |
1029905 |
tatcaaccaagtggtgaagaacaacaaaaatttaatgacaatcagcatagcataatatgaagacttgggttgatatgtatatttactaagtttatccgat |
1030004 |
T |
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| Q |
222 |
gtgttggttactacttctttgtctacttttggatatgttgctcaaggcttgggaaatttgaggccatggcttctatacaa |
301 |
Q |
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| T |
1030005 |
gtattggtaactacttatcaatctacttttgattatgttgctaagggtttaggaaattcaagaccatggattctttacaa |
1030084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 6938080 - 6937824
Alignment:
| Q |
23 |
gattgtgaaggttgttcttgttgcgtctttatatccagaatacggtgataatttaaagacgatgtatacgaataaatcaacttcttcaggggaaataata |
122 |
Q |
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|||| |||||| ||||||||| ||||| |||||| | | || ||||| |||||||||| || ||||| |||||||||||| | |||||| |||| |
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| T |
6938080 |
gattatgaaggctgttcttgtatcgtctctatatcgacattatggtgaaaatttaaagatgacgtatatgaataaatcaacggttagcggggaagtaatt |
6937981 |
T |
|
| Q |
123 |
gaagttcatcaagcaagtggtgaagagcaacaaaaatttaatgataataagcataatatgaaggcttgggttgatatgtatctactaagtttatctgatg |
222 |
Q |
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| T |
6937980 |
gaggtttatcaaccaagtggtgaagagcaacaaaagtttaatgataataagcataatatgaaggcgtgggttgatatttatttactaagtttatcggatg |
6937881 |
T |
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| Q |
223 |
tgttggttactacttctttgtctacttttggatatgttgctcaaggc-ttgggaaatt |
279 |
Q |
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| T |
6937880 |
tattggtgactacttatcaatctacttttggttatgttgct-aaggctttgggaaatt |
6937824 |
T |
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