View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8132_low_18 (Length: 393)

Name: NF8132_low_18
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8132_low_18
NF8132_low_18
[»] chr3 (2 HSPs)
chr3 (18-386)||(53666097-53666465)
chr3 (20-70)||(32891404-32891456)
[»] chr2 (1 HSPs)
chr2 (19-70)||(24198202-24198253)
[»] chr8 (1 HSPs)
chr8 (206-260)||(43396444-43396498)
[»] scaffold0351 (1 HSPs)
scaffold0351 (18-69)||(2087-2138)
[»] chr1 (1 HSPs)
chr1 (20-70)||(31649915-31649963)
[»] chr7 (3 HSPs)
chr7 (18-70)||(3826178-3826231)
chr7 (20-76)||(14069629-14069688)
chr7 (20-76)||(14379657-14379716)
[»] chr6 (1 HSPs)
chr6 (20-75)||(14521475-14521532)
[»] chr5 (1 HSPs)
chr5 (20-56)||(12102583-12102620)
[»] chr4 (3 HSPs)
chr4 (353-382)||(21402206-21402235)
chr4 (20-55)||(4588265-4588301)
chr4 (18-58)||(4914479-4914519)


Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 53666097 - 53666465
Alignment:
Q  18 ccttgctccacacatcaaagtttattggtgtgagttttgatccgaaatcacaataataacgaatcttaacgagttactccacatcacttcaatttaactt 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53666097 ccttgctccacacatcaaagtttatcggtgtgagttttgatccgaaatcacaataataacgaatcttaacgagttactccacatcacttcaatttaactt 53666196  T
Q  118 gggttgaaatcctcttattcagcagcctccacgcaaataattatagtagcttaattaaaaatagcaacttgtaaacccggactcaacagtgaagatcact 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  53666197 gggttgaaatcctcttattcaacagcctccacgcaaataattatagtagcttaattaaaaatagcaactcgtaaacccggactcaacagtgaagatccct 53666296  T
Q  218 ttggttcatgagaaaattccgcatacaaatcaggaagatattccatcaaattttgatatctggatattgatcagtagatagtaggcagaatcatttaagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53666297 ttggttcatgagaaaattccgcatacaaatcaggaagatattccatcaaattttgatatctggatattgatcagtagatagtaggcagaatcatttaagt 53666396  T
Q  318 gatgcatctcacaaaaggnnnnnnngaataagatgaaatgcaagtaaatttattaatattgatgatgtc 386  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||    
T  53666397 gatgcatctcacaaaaggaaaaaaagaataagatgaaatgcaagtaaatttactaatattgatgatgtc 53666465  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 32891404 - 32891456
Alignment:
Q  20 ttgctccacacatcaaagttt-attggtgtgagttttga-tccgaaatcacaa 70  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||    
T  32891404 ttgctccacacatcatagtttcattggtgtgagttttgagtccgaagtcacaa 32891456  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 24198202 - 24198253
Alignment:
Q  19 cttgctccacacatcaaagtttattggtgtgagttttgatccgaaatcacaa 70  Q
    ||||||||||||||| |||||| ||||||||||||||||||| || ||||||    
T  24198202 cttgctccacacatctaagtttgttggtgtgagttttgatccaaattcacaa 24198253  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 43396444 - 43396498
Alignment:
Q  206 gtgaagatcactttggttcatgagaaaattccgcatacaaatcaggaagatattc 260  Q
    ||||| ||| ||||||| |||||||||| |||||| |||||||||||||||||||    
T  43396444 gtgaatatctctttggtacatgagaaaactccgcaaacaaatcaggaagatattc 43396498  T

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Target: scaffold0351 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 2087 - 2138
Alignment:
Q  18 ccttgctccacacatcaaagtttattggtgtgagttttgatccgaaatcaca 69  Q
    |||||||| || |||||||||||||||||||||||||| |||| || |||||    
T  2087 ccttgctctacccatcaaagtttattggtgtgagtttttatcccaattcaca 2138  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 31649915 - 31649963
Alignment:
Q  20 ttgctccacacatcaaagtttattggtgtgagttttgatccgaaatcacaa 70  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| ||||||    
T  31649915 ttgctccacacatcaaaat--attggtgtgagttttgatccgaactcacaa 31649963  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 3826231 - 3826178
Alignment:
Q  18 ccttgctccacacatcaaagtttattggtgtgagttttga-tccgaaatcacaa 70  Q
    |||||||||||||||  ||||||||||||||||||| ||| |||||| ||||||    
T  3826231 ccttgctccacacattcaagtttattggtgtgagttctgagtccgaattcacaa 3826178  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 14069688 - 14069629
Alignment:
Q  20 ttgctccacacatcaaagttt--attggtgtgagttttga-tccgaaatcacaataataa 76  Q
    ||||||||||||||| |||||  ||||||||||||||||| |||||| |||||| |||||    
T  14069688 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaataa 14069629  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 14379716 - 14379657
Alignment:
Q  20 ttgctccacacatcaaagttt--attggtgtgagttttga-tccgaaatcacaataataa 76  Q
    ||||||||||||||| |||||  ||||||||||||||||| |||||| |||||| |||||    
T  14379716 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaataa 14379657  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 14521532 - 14521475
Alignment:
Q  20 ttgctccacacatcaaagttt-attggtgtgagttttga-tccgaaatcacaataata 75  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||| |||||| ||||    
T  14521532 ttgctccacacatcatagtttcattggtgtgagttttgagtccgaattcacaacaata 14521475  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 12102583 - 12102620
Alignment:
Q  20 ttgctccacacatcaaagt-ttattggtgtgagttttg 56  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12102583 ttgctccacacatcaaagtattattggtgtgagttttg 12102620  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 382
Target Start/End: Original strand, 21402206 - 21402235
Alignment:
Q  353 aaatgcaagtaaatttattaatattgatga 382  Q
    ||||||||||||||||||||||||||||||    
T  21402206 aaatgcaagtaaatttattaatattgatga 21402235  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 4588265 - 4588301
Alignment:
Q  20 ttgctccacacatcaaagt-ttattggtgtgagtttt 55  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4588265 ttgctccacacatcaaagtattattggtgtgagtttt 4588301  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4914479 - 4914519
Alignment:
Q  18 ccttgctccacacatcaaagtttattggtgtgagttttgat 58  Q
    |||||||| |||||||||||||||||||  |||||||||||    
T  4914479 ccttgctcaacacatcaaagtttattggcatgagttttgat 4914519  T

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