View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_19 (Length: 384)
Name: NF8132_low_19
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 114 - 370
Target Start/End: Original strand, 25525380 - 25525636
Alignment:
| Q |
114 |
cctcttgaagaaaatctgcaacacccttgcgtggtggaagtttgaaacttaatgattcaaaaaattctaccacatgttctatggggccttgatatactat |
213 |
Q |
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| T |
25525380 |
cctcttgaagaaaatctgcaacacccttgcgtggtggaagtttgaaacttaatgattcaaaaaattctaccacatgttctatggggccttgatatactat |
25525479 |
T |
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| Q |
214 |
atgtccatctgacagaagtattagatcatcaaagagatcaaaagtctccggcgcaggttgaagaagagccattagtacagtagcttccatttcatgaaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25525480 |
atgtccatctgacagaagtattagatcatcaaagagatcaaaagtctccggcgcaggttgaagaagagccattagtacagtagcttccatttcatgaaca |
25525579 |
T |
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| Q |
314 |
aaatttcttatgcattttactatctggaatgtggtagagctatcaagtccagttgat |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25525580 |
aaatttcttatgcattttactatctggaatgtggtagagctatcaagtccagttgat |
25525636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 114 - 370
Target Start/End: Complemental strand, 29774467 - 29774211
Alignment:
| Q |
114 |
cctcttgaagaaaatctgcaacacccttgcgtggtggaagtttgaaacttaatgattcaaaaaattctaccacatgttctatggggccttgatatactat |
213 |
Q |
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|||||||||| || ||||||| ||||| ||||||||||||| |||| || ||| ||||||||||| | ||||| |||| | ||||||| ||||| | |
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| T |
29774467 |
cctcttgaaggaagtctgcaatccccttacgtggtggaagttgaaaacctattgactcaaaaaattcaagcacatcttctctagggccttcatatataac |
29774368 |
T |
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| Q |
214 |
atgtccatctgacagaagtattagatcatcaaagagatcaaaagtctccggcgcaggttgaagaagagccattagtacagtagcttccatttcatgaaca |
313 |
Q |
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||| || || |||||||| | ||||||||||| || ||||| || || || || |||||||| || ||||| ||||| ||||| ||||| | ||||||| |
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| T |
29774367 |
atgcccttcggacagaagcaccagatcatcaaatagctcaaatgtttcaggagctggttgaaggagtgccatgagtactgtagcctccatctgatgaaca |
29774268 |
T |
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| Q |
314 |
aaatttcttatgcattttactatctggaatgtggtagagctatcaagtccagttgat |
370 |
Q |
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||||| |||||||||| ||||||||| |||| |||||||||||||| ||||||||| |
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| T |
29774267 |
aaattctttatgcatttcactatctggtatgtagtagagctatcaagcccagttgat |
29774211 |
T |
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