View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_2 (Length: 519)
Name: NF8132_low_2
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Complemental strand, 7974173 - 7973686
Alignment:
| Q |
15 |
caaaaacttcttcctattctcagcatacacgtgtccatcccatccacgcttcaccaaatcaccacccaactcaaccgcagccttaaccgtttcctcagca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| | |
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| T |
7974173 |
caaaaacttcttcctattctcagcatacacgtgtccatcccatccacgtttcaccaaattaccacccaattcaaccgcagccttaaccgtttcctccacg |
7974074 |
T |
|
| Q |
115 |
ctatcatgcgccgagtcaatgattcctaatcttaccgcctccttcgctgtcaccttcgccgcctgcatcacaatcttcctcctcgccgcagcatcaccaa |
214 |
Q |
| |
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||||||||||||||||||| || || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7974073 |
ctatcatgcgccgagtcaacaatccccaatctcaccgcctccttcgccgtcaccttcgccgcctgcatcacaatcttcctcctcgccgcagcatcaccaa |
7973974 |
T |
|
| Q |
215 |
ccttcgcatcaacaatcgcaataaaccacgccggaatcacatgatcgatgtcaagctcactcatgtagagaaatccacgatccgatcgcattaaaacata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
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| T |
7973973 |
ccttcgcatcaacaatcgcaataaaccacgccggaatcacatgatcgatgtcaagctcactcatgtagagaaatccacgatcggatcgcattaacacgta |
7973874 |
T |
|
| Q |
315 |
gtcgtgagataatgcgaggatgtaacctgcggcggatgcatgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7973873 |
gtcgtgagataatgcgaggatgtaacctgcggcggatgcgtgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaa |
7973774 |
T |
|
| Q |
415 |
cgaaggagatcgtcgatgaggatgatgcgtgatttgttgtcttgtgcccagtcgatgtcgtaaccgttggagaagaatttgccgtgtg |
502 |
Q |
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| T |
7973773 |
cgaaggagatcgtcgatgaggatgatgcgtgatttgttgtcttgtgcccagtcgatgtcgtaaccgttggagaagaattttccgtgtg |
7973686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 15 - 502
Target Start/End: Original strand, 7966704 - 7967203
Alignment:
| Q |
15 |
caaaaacttcttcctattctcagcatacacgtgtccatcccatccacgcttcaccaaatcaccacccaactcaaccgcagccttaaccgtttcctcagca |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| | |
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|
| T |
7966704 |
caaaagcttcttcctattctcagcatacacgtctccattcaatccacgcttcaccaaatcaccgctcaattcaaccgcagccttaaccgtttcctcaacg |
7966803 |
T |
|
| Q |
115 |
ctatcatgcgccgagtcaatgattcctaatcttaccgcctccttcgctgtcaccttcgccgcctgcatcacaatcttcctcctcgccgcagcatcaccaa |
214 |
Q |
| |
|
||||||||||||||||||| ||| || ||||| |||||||||| || ||||||||| |||||| | |||||||| || || | ||| |||||||||| |
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| T |
7966804 |
ctatcatgcgccgagtcaacgatccccaatctcaccgcctcctcagccgtcaccttctccgcctccgtcacaatcctcttcattgccaacgcatcaccaa |
7966903 |
T |
|
| Q |
215 |
ccttcgcatcaacaatcgcaataaaccacgccggaatcacatg------------atcgatgtcaagctcactcatgtagagaaatccacgatccgatcg |
302 |
Q |
| |
|
|||| || ||||||| |||| |||||| |||||||| ||||| ||| || |||||||| || ||||||||||| || |||| || | |
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| T |
7966904 |
cctttgcttcaacaacagcaacaaaccatgccggaataacatgatcaatatcaatatcaatatcaagctcgttcttgtagagaaattcatgatcggagct |
7967003 |
T |
|
| Q |
303 |
cattaaaacatagtcgtgagataatgcgaggatgtaacctgcggcggatgcatgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcg |
402 |
Q |
| |
|
|||||||| ||||||||||| | ||||| ||||||||| |||| ||| || ||||||||||| |||| ||||||||||| || ||||| | |||||| |
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| T |
7967004 |
cattaaaaagtagtcgtgagaaagtgcgaagatgtaaccggcggtggaggcgtgaccggtgacaacggcaatggtaggcatagggagagaaatgagttcg |
7967103 |
T |
|
| Q |
403 |
gagacgacggaacgaaggagatcgtcgatgaggatgatgcgtgatttgttgtcttgtgcccagtcgatgtcgtaaccgttggagaagaatttgccgtgtg |
502 |
Q |
| |
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|| | ||| ||||| || ||| ||||||||||||| ||| |||||||| ||||||||| |||||||| || |||||||||||||||||| |||||| |
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| T |
7967104 |
gaaaggacagaacggagtgaatcatcgatgaggatgaagcgagatttgttagattgtgcccaatcgatgtcatagccgttggagaagaatttgtcgtgtg |
7967203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 27962868 - 27962920
Alignment:
| Q |
313 |
tagtcgtgagataatgcgaggatgtaacctgcggcggatgcatgaccggtgac |
365 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| || || | ||||||||| |
|
|
| T |
27962868 |
tagtcgtgagataattcgaggatgtaacctacggctgaggcgttaccggtgac |
27962920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 253 - 478
Target Start/End: Original strand, 55819429 - 55819654
Alignment:
| Q |
253 |
acatgatcgatgtcaagctcactcatgtagagaaatccacgatccgatcgcattaaaacatagtcgtgagataatgcgaggatgtaacctgcggcggatg |
352 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||| |||||| |||||| ||| || ||||| ||||||||| |||||||||||||| | || || | |
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|
| T |
55819429 |
acatgatcgctgtcaagttcgctcatgtagagaaatctacgatctgatcgctataacacgtagtcatgagataatccgaggatgtaacctactgctgagg |
55819528 |
T |
|
| Q |
353 |
catgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaacgaaggagatcgtcgatgaggatgatgcgtgatttgtt |
452 |
Q |
| |
|
| | |||||||||| |||||||||| || |||||| ||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| || ||||| |
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| T |
55819529 |
cgttaccggtgacgacggcgatggttggtatgggaggagagagaatttcggagacgatgaaacagaggagatcgtcgatgaggatcatgcgagagttgtt |
55819628 |
T |
|
| Q |
453 |
gtcttgtgcccagtcgatgtcgtaac |
478 |
Q |
| |
|
|| |||||||||||||||||| |||| |
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| T |
55819629 |
gttttgtgcccagtcgatgtcataac |
55819654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 253 - 473
Target Start/End: Complemental strand, 1068946 - 1068726
Alignment:
| Q |
253 |
acatgatcgatgtcaagctcactcatgtagagaaatccacgatccgatcgcattaaaacatagtcgtgagataatgcgaggatgtaacctgcggcggatg |
352 |
Q |
| |
|
||||||||| ||||||| || ||||||| ||||||||||||||| |||||| ||| | ||||||||||||||| |||||||||||||| || || | |
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| T |
1068946 |
acatgatcgctgtcaagttcgctcatgttgagaaatccacgatctgatcgctataacatgtagtcgtgagataatccgaggatgtaacctaaggatgagg |
1068847 |
T |
|
| Q |
353 |
catgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaacgaaggagatcgtcgatgaggatgatgcgtgatttgtt |
452 |
Q |
| |
|
| | |||||||||| | ||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||||| || ||||| |
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|
| T |
1068846 |
cgttaccggtgacgacaacgatggttggcatgggaagagagagaagtttggagacgatggaacggaggagatcgtcgatgaggatcatgcgagagttgtt |
1068747 |
T |
|
| Q |
453 |
gtcttgtgcccagtcgatgtc |
473 |
Q |
| |
|
|| || |||||| |||||||| |
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|
| T |
1068746 |
gttttatgcccaatcgatgtc |
1068726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 14838822 - 14838770
Alignment:
| Q |
313 |
tagtcgtgagataatgcgaggatgtaacctgcggcggatgcatgaccggtgac |
365 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| || || | ||||||||| |
|
|
| T |
14838822 |
tagtcgtgagataatccgaggatgtaacctacggctgaggcgttaccggtgac |
14838770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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