View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8132_low_22 (Length: 364)

Name: NF8132_low_22
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8132_low_22
NF8132_low_22
[»] chr5 (38 HSPs)
chr5 (1-355)||(37032692-37033046)
chr5 (225-342)||(4943117-4943238)
chr5 (224-311)||(23661912-23661998)
chr5 (224-311)||(23796572-23796658)
chr5 (233-310)||(12713112-12713190)
chr5 (233-310)||(12774376-12774454)
chr5 (224-309)||(25456310-25456396)
chr5 (240-346)||(35813531-35813639)
chr5 (224-344)||(1649406-1649526)
chr5 (232-308)||(10827143-10827219)
chr5 (253-342)||(20928062-20928153)
chr5 (272-339)||(23661942-23662009)
chr5 (272-339)||(23796561-23796628)
chr5 (222-310)||(35461470-35461559)
chr5 (222-345)||(4943175-4943302)
chr5 (222-307)||(14604102-14604189)
chr5 (222-310)||(5746129-5746218)
chr5 (222-310)||(16327132-16327221)
chr5 (253-339)||(17400793-17400881)
chr5 (240-310)||(23662110-23662182)
chr5 (227-310)||(35461655-35461739)
chr5 (224-310)||(19550133-19550220)
chr5 (230-339)||(25456497-25456608)
chr5 (221-339)||(1996145-1996266)
chr5 (272-310)||(7209882-7209920)
chr5 (272-339)||(16327161-16327230)
chr5 (224-342)||(20927845-20927966)
chr5 (272-310)||(28559329-28559367)
chr5 (222-303)||(28559450-28559532)
chr5 (222-290)||(17400821-17400890)
chr5 (273-339)||(28559442-28559510)
chr5 (225-310)||(16327316-16327400)
chr5 (272-310)||(1996236-1996274)
chr5 (272-339)||(5746158-5746227)
chr5 (253-310)||(17400579-17400635)
chr5 (253-310)||(40980745-40980802)
chr5 (291-342)||(10827167-10827219)
chr5 (274-339)||(25456338-25456405)
[»] chr6 (22 HSPs)
chr6 (222-339)||(10356264-10356384)
chr6 (222-339)||(21598660-21598780)
chr6 (253-339)||(10356324-10356412)
chr6 (222-310)||(10356476-10356565)
chr6 (222-339)||(21598448-21598568)
chr6 (222-339)||(24059670-24059788)
chr6 (222-310)||(17342655-17342744)
chr6 (224-310)||(17136878-17136965)
chr6 (272-339)||(10356467-10356536)
chr6 (272-339)||(17136907-17136976)
chr6 (272-310)||(21598651-21598689)
chr6 (272-339)||(24059728-24059797)
chr6 (225-310)||(364020-364105)
chr6 (273-310)||(9982936-9982973)
chr6 (272-311)||(2761494-2761533)
chr6 (272-310)||(364203-364241)
chr6 (272-310)||(17342534-17342572)
chr6 (272-310)||(17342646-17342684)
chr6 (224-342)||(364214-364333)
chr6 (273-339)||(21598508-21598576)
chr6 (253-310)||(35050712-35050769)
chr6 (225-304)||(13273108-13273185)
[»] chr3 (37 HSPs)
chr3 (222-338)||(30954959-30955078)
chr3 (222-338)||(30970771-30970890)
chr3 (222-339)||(252049-252169)
chr3 (222-307)||(40286275-40286361)
chr3 (222-310)||(46337536-46337625)
chr3 (222-310)||(47069562-47069651)
chr3 (224-311)||(7607702-7607789)
chr3 (224-310)||(18020038-18020125)
chr3 (224-310)||(47891336-47891423)
chr3 (272-310)||(28813931-28813969)
chr3 (227-303)||(32186692-32186769)
chr3 (272-310)||(14964923-14964961)
chr3 (222-311)||(25848572-25848662)
chr3 (222-310)||(13903018-13903107)
chr3 (273-339)||(26724073-26724141)
chr3 (222-310)||(28813871-28813960)
chr3 (273-339)||(36900140-36900208)
chr3 (272-320)||(40209880-40209928)
chr3 (271-311)||(50332697-50332737)
chr3 (272-311)||(252139-252178)
chr3 (271-310)||(25848321-25848360)
chr3 (280-311)||(30954958-30954989)
chr3 (280-311)||(30970770-30970801)
chr3 (272-339)||(18020027-18020096)
chr3 (272-310)||(25848503-25848541)
chr3 (222-311)||(25848512-25848602)
chr3 (272-310)||(26976501-26976539)
chr3 (225-311)||(36375019-36375105)
chr3 (272-310)||(36667285-36667323)
chr3 (272-310)||(40286332-40286370)
chr3 (272-302)||(42866096-42866126)
chr3 (272-310)||(47891325-47891363)
chr3 (284-320)||(26724229-26724265)
chr3 (234-310)||(26724238-26724313)
chr3 (286-343)||(36667137-36667196)
chr3 (280-339)||(39714633-39714693)
chr3 (271-311)||(43650017-43650057)
[»] chr7 (27 HSPs)
chr7 (232-310)||(29710354-29710433)
chr7 (224-311)||(42313007-42313095)
chr7 (222-310)||(27576545-27576634)
chr7 (222-340)||(11975450-11975570)
chr7 (271-339)||(31453046-31453116)
chr7 (222-310)||(27280823-27280912)
chr7 (253-310)||(42312793-42312850)
chr7 (255-311)||(30662188-30662244)
chr7 (226-311)||(6222113-6222198)
chr7 (272-310)||(29019342-29019380)
chr7 (225-310)||(44293989-44294075)
chr7 (253-310)||(4048236-4048293)
chr7 (273-310)||(6694736-6694773)
chr7 (222-339)||(11975655-11975775)
chr7 (224-311)||(29710536-29710624)
chr7 (240-310)||(30869632-30869703)
chr7 (272-310)||(4048418-4048456)
chr7 (272-310)||(27576536-27576574)
chr7 (272-339)||(29710525-29710594)
chr7 (225-297)||(3198258-3198331)
chr7 (285-339)||(6222142-6222198)
chr7 (273-310)||(11975541-11975578)
chr7 (273-310)||(27280815-27280852)
chr7 (253-310)||(29710414-29710470)
chr7 (266-307)||(30869446-30869487)
chr7 (222-285)||(6694744-6694808)
chr7 (270-310)||(26185963-26186003)
[»] scaffold0018 (4 HSPs)
scaffold0018 (222-355)||(161391-161527)
scaffold0018 (222-310)||(161619-161708)
scaffold0018 (272-339)||(161467-161536)
scaffold0018 (272-310)||(161610-161648)
[»] chr4 (44 HSPs)
chr4 (222-310)||(7246026-7246115)
chr4 (222-346)||(40146948-40147074)
chr4 (227-339)||(40395102-40395217)
chr4 (222-344)||(45038390-45038515)
chr4 (222-310)||(41083088-41083177)
chr4 (222-339)||(41083268-41083388)
chr4 (253-309)||(45038281-45038337)
chr4 (224-310)||(2470124-2470211)
chr4 (273-339)||(24684254-24684320)
chr4 (272-339)||(45038381-45038450)
chr4 (227-295)||(9999338-9999407)
chr4 (222-310)||(46196144-46196233)
chr4 (222-310)||(53863351-53863440)
chr4 (262-339)||(24684055-24684134)
chr4 (224-310)||(2469933-2470019)
chr4 (272-339)||(2787950-2788017)
chr4 (255-310)||(7246086-7246141)
chr4 (272-311)||(51950563-51950602)
chr4 (253-311)||(11884649-11884707)
chr4 (272-339)||(53863380-53863449)
chr4 (266-311)||(7246283-7246328)
chr4 (286-339)||(50290186-50290239)
chr4 (224-308)||(2787923-2788006)
chr4 (284-320)||(12698010-12698046)
chr4 (271-311)||(21322034-21322074)
chr4 (240-311)||(44057295-44057367)
chr4 (272-311)||(12498713-12498752)
chr4 (272-311)||(41083259-41083298)
chr4 (273-311)||(2788160-2788198)
chr4 (222-311)||(12498653-12498743)
chr4 (260-310)||(12498873-12498923)
chr4 (270-311)||(12697114-12697156)
chr4 (272-339)||(17231991-17232060)
chr4 (280-310)||(17236808-17236838)
chr4 (232-304)||(26782332-26782406)
chr4 (272-339)||(40395162-40395231)
chr4 (272-310)||(41083148-41083186)
chr4 (225-346)||(55617568-55617691)
chr4 (225-346)||(55624872-55624995)
chr4 (224-310)||(9999506-9999591)
chr4 (222-339)||(24684262-24684379)
chr4 (271-340)||(25055883-25055954)
chr4 (222-311)||(45038222-45038309)
chr4 (254-339)||(46196365-46196452)
[»] chr2 (23 HSPs)
chr2 (224-339)||(36217160-36217275)
chr2 (224-310)||(31630291-31630377)
chr2 (280-342)||(36694374-36694436)
chr2 (222-310)||(1316069-1316158)
chr2 (222-310)||(9500939-9501028)
chr2 (273-339)||(25895182-25895250)
chr2 (222-311)||(36694347-36694435)
chr2 (280-311)||(3876951-3876982)
chr2 (271-310)||(33847697-33847736)
chr2 (272-310)||(9500999-9501037)
chr2 (272-310)||(11791804-11791842)
chr2 (272-339)||(25894968-25895037)
chr2 (225-310)||(29379910-29379996)
chr2 (272-310)||(31630159-31630197)
chr2 (272-310)||(36694519-36694557)
chr2 (297-342)||(45388495-45388541)
chr2 (224-339)||(31630070-31630186)
chr2 (255-333)||(39442243-39442323)
chr2 (240-304)||(3876768-3876832)
chr2 (273-309)||(4188657-4188693)
chr2 (283-311)||(31630291-31630319)
chr2 (222-285)||(33847707-33847771)
chr2 (283-342)||(36217160-36217220)
[»] scaffold0279 (2 HSPs)
scaffold0279 (222-310)||(1149-1238)
scaffold0279 (272-310)||(1140-1178)
[»] chr1 (15 HSPs)
chr1 (283-340)||(1173074-1173132)
chr1 (224-310)||(40892516-40892602)
chr1 (222-339)||(33650401-33650522)
chr1 (271-339)||(7489962-7490032)
chr1 (271-310)||(52913173-52913212)
chr1 (222-342)||(52913031-52913156)
chr1 (282-339)||(2633538-2633597)
chr1 (272-308)||(18981086-18981122)
chr1 (222-341)||(18608793-18608915)
chr1 (272-311)||(33650492-33650531)
chr1 (224-278)||(1173078-1173132)
chr1 (225-311)||(18204930-18205016)
chr1 (272-310)||(18608672-18608710)
chr1 (222-286)||(34173316-34173381)
chr1 (222-293)||(18608629-18608701)
[»] chr8 (21 HSPs)
chr8 (222-310)||(6220397-6220486)
chr8 (222-310)||(41151439-41151528)
chr8 (280-339)||(41151680-41151741)
chr8 (273-339)||(6220389-6220457)
chr8 (222-339)||(24909618-24909738)
chr8 (227-310)||(27052613-27052697)
chr8 (222-344)||(9400041-9400166)
chr8 (225-310)||(20209477-20209563)
chr8 (225-310)||(20229185-20229271)
chr8 (240-310)||(24083264-24083334)
chr8 (252-310)||(27052502-27052560)
chr8 (272-310)||(27127968-27128006)
chr8 (222-309)||(27052443-27052531)
chr8 (272-311)||(29427960-29427999)
chr8 (280-310)||(9400040-9400070)
chr8 (222-310)||(27127911-27127997)
chr8 (225-339)||(27128092-27128209)
chr8 (280-310)||(41151499-41151529)
chr8 (272-310)||(41151611-41151649)
chr8 (271-311)||(15563877-15563917)
chr8 (286-339)||(27052613-27052668)
[»] scaffold0002 (3 HSPs)
scaffold0002 (222-339)||(12054-12171)
scaffold0002 (240-339)||(12278-12377)
scaffold0002 (272-339)||(12112-12180)
[»] scaffold0157 (3 HSPs)
scaffold0157 (272-311)||(21725-21764)
scaffold0157 (260-310)||(21554-21604)
scaffold0157 (222-311)||(21734-21824)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 37032692 - 37033046
Alignment:
Q  1 tgcaagcttgaattttaacctatgagacgactagatcagcctaaattgcacaagtgcaaggcacccggttccgttgtacgaagagattctcaacattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37032692 tgcaagcttgaattttaacctatgagacgactagatcagcctaaattgcacaagtgcaaggcacccggttccgttgtactaagagattctcaacattcac 37032791  T
Q  101 gcagtaaaagatcgatggttccttgatcaagaatggggagtccaaattcaagatcggttttaaattataaaataaatattaatttacatttgcatttatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032792 gcagtaaaagatcgatggttccttgatcaagaatggggagtccaaattcaagatcggttttaaattataaaataaatattaatttacatttgcatttatg 37032891  T
Q  201 aaggactaaatcgaaaacgttaggacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032892 aaggactaaatcgaaaacgttaggacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaa 37032991  T
Q  301 ataacttaaaactaatctgtcataaatctcaaacttaaaagatcccaagtataat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032992 ataacttaaaactaatctgtcataaatctcaaacttaaaagatcccaagtataat 37033046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 342
Target Start/End: Original strand, 4943117 - 4943238
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa--accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgt 320  Q
    |||||| ||||||| |||||||||||||  | |||| |||||||||| |||||||| |||||||||||||||| |||||||| |||||  || ||| |||    
T  4943117 acttatgtgtgaccaaaataacttaaaaggatcaatctgttataaatttcaaacttaaaggacttatgtgtgatcaaaataatttaaagtaccaatatgt 4943216  T
Q  321 cataaatctcaaacttaaaaga 342  Q
     | |||||||||||||||||||    
T  4943217 tacaaatctcaaacttaaaaga 4943238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 23661998 - 23661912
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||||| ||||||||||||| | ||| ||| | ||||||||||||| |||||||||||||| |||||||||||||||||    
T  23661998 gacttatgtgtgaccaaaataacttaaaatc-aatctgtcacaaatatcaaacttaaaggacttatgtgtaaccaaaataacttaaaa 23661912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 23796572 - 23796658
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||||| ||||||||||||| | ||| ||| | ||||||||||||| |||||||||||||| |||||||||||||||||    
T  23796572 gacttatgtgtgaccaaaataacttaaaatc-aatctgtcacaaatatcaaacttaaaggacttatgtgtaaccaaaataacttaaaa 23796658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 12713112 - 12713190
Alignment:
Q  233 gtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| ||||||||||||| | |||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||    
T  12713112 gtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtgtgacaaaaataacttaaa 12713190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 12774376 - 12774454
Alignment:
Q  233 gtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| ||||||||||||| | |||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||    
T  12774376 gtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtgtgacaaaaataacttaaa 12774454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 25456396 - 25456310
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa 309  Q
    ||||||||||||||| ||||||||||||  |||||| ||||| |||  |||||||| |||||||||||||||| |||||||||||||    
T  25456396 gacttatttgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgtgatcaaaataacttaa 25456310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 35813531 - 35813639
Alignment:
Q  240 aaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtcataaatctcaaactta 337  Q
    ||||||||||||||| ||| ||||| |||  ||| |||| |||||||||||||| |||||||||||||||  ||||||||||| | ||| || |||||||    
T  35813531 aaataacttaaaaacaaatctgttacaaacctcacacttaaaggacttatgtgtaaccaaaataacttaaataactaatctgttacaaaccttaaactta 35813630  T
Q  338 aaagatccc 346  Q
    || ||||||    
T  35813631 aatgatccc 35813639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 1649406 - 1649526
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtcat 323  Q
    ||||||| | ||||| ||||| |||||||||||||||||||||||  |||| ||| || ||||| ||||||| |||||||||||||||  ||| ||| |     
T  1649406 gacttatgtctgaccaaaatagcttaaaaaccaatatgttataaacctcaagctttaatgacttgtgtgtgatcaaaataacttaaaatcaatatgttac 1649505  T
Q  324 aaatctcaaacttaaaagatc 344  Q
    ||| || ||||||||| ||||    
T  1649506 aaaccttaaacttaaaggatc 1649526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 10827219 - 10827143
Alignment:
Q  232 tgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataactta 308  Q
    ||||||| |||||||||||| |||||| ||||| |||  |||||||| || ||||||||||||||||||||||||||    
T  10827219 tgtgaccaaaataacttaaagaccaatctgttacaaaactcaaacttaaaagacttatgtgtgaccaaaataactta 10827143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 20928062 - 20928153
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaaaga 342  Q
    |||||| ||||| |||  |||||||| |||||||||||||||||||||||||||||||  || ||||||| ||||| |||||| ||||||||    
T  20928062 accaatttgttagaaaactcaaacttaaaggacttatgtgtgaccaaaataacttaaaggacaaatctgttataaacctcaaagttaaaaga 20928153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 23662009 - 23661942
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || |||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||    
T  23662009 caaacttaaaagacttatgtgtgaccaaaataacttaaaatcaatctgtcacaaatatcaaacttaaa 23661942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 23796561 - 23796628
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || |||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||    
T  23796561 caaacttaaaagacttatgtgtgaccaaaataacttaaaatcaatctgtcacaaatatcaaacttaaa 23796628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 35461559 - 35461470
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||||||||| | |||||| |||||  |||||| ||||| |||  ||||||||  ||||||||||||||||||||||||||||||    
T  35461559 aggacttatttgtgatcaaaataatttaaaggaccaatctgttacaaacttcaaacttacaggacttatgtgtgaccaaaataacttaaa 35461470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 4943175 - 4943302
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaagga-cttatgtgtgaccaaaataacttaaa--actaatc 317  Q
    ||||||||| ||||| | |||||| |||||  |||||||||||| |||| |||||||| || || ||||||||||||||||||||||||||  || ||||    
T  4943175 aggacttatgtgtgatcaaaataatttaaagtaccaatatgttacaaatctcaaacttaaaagaacttatgtgtgaccaaaataacttaaatgaccaatc 4943274  T
Q  318 tgtcataaatctcaaacttaaaagatcc 345  Q
    | ||| ||| |||||| ||||| |||||    
T  4943275 tatcacaaacctcaaatttaaaggatcc 4943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 14604189 - 14604102
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa--accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataactt 307  Q
    ||||||||| ||||||| ||||||| |||||  | |||| ||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  14604189 aggacttatatgtgaccaaaataacataaaatgatcaatctgttacaaacctcaaacttaaaggacttatgtgtgaccaaaataactt 14604102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 5746218 - 5746129
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| | | ||| ||||||||||||  |||||| |||||||||  ||||| || ||| |||||||||||||||||||||||||||    
T  5746218 aggacttatgttttaccaaaataacttaaatgaccaatctgttataaacctcaaatttaaagaacttatgtgtgaccaaaataacttaaa 5746129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 16327221 - 16327132
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||| ||| ||||||||||||  |||||| ||||| |||  |||||||| ||||||||||||| ||| |||||||||||||    
T  16327221 aggacttatgtgttaccaaaataacttaaacgaccaatctgttacaaacctcaaacttaaaggacttatgtgcgactaaaataacttaaa 16327132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 17400793 - 17400881
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||| ||||| |||  |||||||| |||||||||||||||| ||||||||||||||  || ||| ||| | ||||||||||||||||    
T  17400793 accaatctgttacaaaactcaaacttaaaggacttatgtgtgatcaaaataacttaaatgaccaatatgttacaaatctcaaacttaaa 17400881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 23662110 - 23662182
Alignment:
Q  240 aaataacttaaaa--accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||  |||||| ||||| |||| |||||||| ||| |||||||||| ||||||||||||||||    
T  23662110 aaataacttaaaagaaccaatttgttacaaatctcaaacttaaagaacttatgtgtaaccaaaataacttaaa 23662182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 35461655 - 35461739
Alignment:
Q  227 ttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||  ||||||||||||  | |||| ||||| |||| ||||| || || ||||||||||||||||||||||||||||    
T  35461655 ttatttgtgacaaaaataacttaaatgatcaatctgttacaaatctcaaaattaaatgacttatgtgtgaccaaaataacttaaa 35461739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 19550220 - 19550133
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||| ||| ||||||||||||  | ||| |||||| |||| |||||||| || ||||||||||| ||||||||||||||||    
T  19550220 gacttatgtgtaaccaaaataacttaaatgatcaaaatgttaaaaatctcaaacttaaaagacttatgtgtcaccaaaataacttaaa 19550133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 339
Target Start/End: Original strand, 25456497 - 25456608
Alignment:
Q  230 tttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa-actaatctgtcataaat 327  Q
    ||||||||| ||||||||||||  |||||| | ||| |||  |||||||| ||| | ||||||||||| ||||||||||||| || ||||||| | |||     
T  25456497 tttgtgaccaaaataacttaaaggaccaatctattacaaacctcaaacttaaagtatttatgtgtgactaaaataacttaaagaccaatctgttacaaac 25456596  T
Q  328 ctcaaacttaaa 339  Q
    ||||||||||||    
T  25456597 ctcaaacttaaa 25456608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 1996266 - 1996145
Alignment:
Q  221 taggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatc 317  Q
    |||||||||| ||||||| ||||||||||||  || ||| | ||| |||   ||||||| ||||| |||| ||||||||||||||||||||  |  ||||    
T  1996266 taggacttatgtgtgaccaaaataacttaaaggactaatctattacaaaccccaaacttaaaggatttatatgtgaccaaaataacttaaaatatcaatc 1996167  T
Q  318 tgtcataaatctcaaacttaaa 339  Q
    ||| | ||||||||||||||||    
T  1996166 tgttacaaatctcaaacttaaa 1996145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 7209920 - 7209882
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  7209920 caaacttaaaggacttatgtgtgaccaaaataacttaaa 7209882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 16327230 - 16327161
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| |||||||||||||| ||||||||||||||||  || ||||||| | ||| ||||||||||||    
T  16327230 caaacttaaaggacttatgtgttaccaaaataacttaaacgaccaatctgttacaaacctcaaacttaaa 16327161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 342
Target Start/End: Complemental strand, 20927966 - 20927845
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgt 320  Q
    |||||| |||||||| ||||||||||||  |||||| | ||| |||  ||||| || |||||||||||||| || |||||||||||||  |  ||||| |    
T  20927966 gacttacttgtgaccaaaataacttaaatgaccaatttattacaaacctcaaatttaaaggacttatgtgtaactaaaataacttaaatgatcaatctat 20927867  T
Q  321 cataaatctcaaacttaaaaga 342  Q
     | |||||||||||||||||||    
T  20927866 tacaaatctcaaacttaaaaga 20927845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 28559367 - 28559329
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  28559367 caaacttaaaggacttatgtgtgaccaaaataacttaaa 28559329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 28559450 - 28559532
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaata 303  Q
    ||||||||| ||||||  |||||| |||||  |||||| |||||||||  |||||||| |||||||| |||||||||||||||    
T  28559450 aggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaaggacttgtgtgtgaccaaaata 28559532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 17400821 - 17400890
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatg 290  Q
    ||||||||| ||||| | ||||||||||||  |||||||||||| |||| |||||||| |||||||||||    
T  17400821 aggacttatgtgtgatcaaaataacttaaatgaccaatatgttacaaatctcaaacttaaaggacttatg 17400890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 28559442 - 28559510
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||| ||||||||||||||||| ||||||| |||||  || ||||||| ||||| ||||||||||||    
T  28559442 aaacttaaaggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaa 28559510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 16327316 - 16327400
Alignment:
Q  225 acttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||| ||||||||||||  | |||| ||||| |||  |||||||| ||||||||||||||  | |||||||||||||    
T  16327316 acttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacttaaaggacttatgtgt--ctaaaataacttaaa 16327400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 1996274 - 1996236
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  1996274 caaacttataggacttatgtgtgaccaaaataacttaaa 1996236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 5746227 - 5746158
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| |||||||||||| | ||||||||||||||||  || ||||||| ||||| |||||| |||||    
T  5746227 caaacttaaaggacttatgttttaccaaaataacttaaatgaccaatctgttataaacctcaaatttaaa 5746158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 17400635 - 17400579
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| ||||| |||| |||||||| || ||||||||||||| ||||||||||||||    
T  17400635 accaatttgttacaaatttcaaacttaaaagacttatgtgtga-caaaataacttaaa 17400579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 40980802 - 40980745
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| | ||| |||| |||||||| ||| |||||||||||| ||||||||||||||    
T  40980802 accaatttattacaaatttcaaacttaaagtacttatgtgtgatcaaaataacttaaa 40980745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 10827219 - 10827167
Alignment:
Q  291 tgtgaccaaaataacttaaa-actaatctgtcataaatctcaaacttaaaaga 342  Q
    |||||||||||||||||||| || ||||||| | ||| |||||||||||||||    
T  10827219 tgtgaccaaaataacttaaagaccaatctgttacaaaactcaaacttaaaaga 10827167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 25456405 - 25456338
Alignment:
Q  274 aacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||| || ||||||| ||||||||||||||||||||  || ||||||| | ||| ||||||||||||    
T  25456405 aacttaaaagacttatttgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaa 25456338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 10356384 - 10356264
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||  ||||||| |||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| |||||  |||||| |    
T  10356384 aggacttaagtgtgaccaaaataacttaaagaaccaatctgttacaaatatcaaacttaaaggacttatgtgtgaccaaaataatttaaaggactaattt 10356285  T
Q  319 gtcataaatctcaaacttaaa 339  Q
    || | ||| ||||||||||||    
T  10356284 gttacaaacctcaaacttaaa 10356264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 21598660 - 21598780
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| ||||||| ||||||||||||  |||||||||||| |||   ||||||| ||||||||||||| || ||||||||||||||  || |||||    
T  21598660 aggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaaccacaaacttaaaggacttatgtgagaacaaaataacttaaaggaccaatct 21598759  T
Q  319 gtcataaatctcaaacttaaa 339  Q
    || | ||| ||||||||||||    
T  21598760 gttacaaacctcaaacttaaa 21598780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 10356412 - 10356324
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtcataaatctcaaacttaaa 339  Q
    |||||| | ||| ||||||||||||| ||||||||| ||||||||||||||||||||  ||| ||||||| | |||| |||||||||||    
T  10356412 accaatctattacaaatatcaaacttaaaggacttaagtgtgaccaaaataacttaaagaaccaatctgttacaaatatcaaacttaaa 10356324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 10356476 - 10356565
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| |||| |  ||||||||||||| |||||| ||||| |||| |||||||| |||||||||||||| ||||||||||| ||||    
T  10356476 aggacttatgtgtggcaaaaataacttaaaagaccaatctgttacaaatctcaaacttaaaggacttatgtgttaccaaaataacctaaa 10356565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 21598568 - 21598448
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| || || | ||||||||||||  |||||| ||||| |||  |||||||| |||||||||||||  ||||||||||||||||  || |||||    
T  21598568 aggacttatgtgggatcaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgcaaccaaaataacttaaaggaccaatct 21598469  T
Q  319 gtcataaatctcaaacttaaa 339  Q
    || ||||| ||||||||||||    
T  21598468 gttataaacctcaaacttaaa 21598448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 24059788 - 24059670
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgt 320  Q
    ||||||||| ||||||| |||||| |||||  | |||| |||||||||  |||||||| ||||||||||||| | ||||| ||||||||||  ||| |||    
T  24059788 aggacttatgtgtgaccaaaataatttaaatgatcaatctgttataaacctcaaacttaaaggacttatgtggggccaaagtaacttaaaatcaatatgt 24059689  T
Q  321 cataaatctcaaacttaaa 339  Q
     | ||| ||||||||||||    
T  24059688 tacaaacctcaaacttaaa 24059670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 17342655 - 17342744
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| ||||||||||||  ||||| |||||| |||  |||||||| || ||||||||| | ||||||||||||||||    
T  17342655 aggacttatgtgtgaccgaaataacttaaaggaccaacatgttacaaacctcaaacttaaaagacttatgtattaccaaaataacttaaa 17342744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 17136965 - 17136878
Alignment:
Q  224 gacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||| |||||||||||| ||  ||| ||||| |||  |||||||| || |||||||||| |||||||||||||||||    
T  17136965 gacttatgtgtgaccaaaataacttaaagaattaatctgttacaaacctcaaacttaaatgacttatgtgagaccaaaataacttaaa 17136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 10356467 - 10356536
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| ||||||||||||||| | |||||||||||||  || ||||||| | ||||||||||||||||    
T  10356467 caaacttaaaggacttatgtgtggcaaaaataacttaaaagaccaatctgttacaaatctcaaacttaaa 10356536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 17136976 - 17136907
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || |||||||||||||||||||||||||||  || |||||||| | ||| ||||||||||||    
T  17136976 caaacttaaaagacttatgtgtgaccaaaataacttaaagaattaatctgttacaaacctcaaacttaaa 17136907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 21598651 - 21598689
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  21598651 caaacttaaaggacttatgtgtgaccaaaataacttaaa 21598689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 24059797 - 24059728
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| ||||||||||||||||||||||||| |||||  |  ||||||| ||||| ||||||||||||    
T  24059797 caaacttaaaggacttatgtgtgaccaaaataatttaaatgatcaatctgttataaacctcaaacttaaa 24059728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 364105 - 364020
Alignment:
Q  225 acttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||| ||| |||||||||| |||| ||||| |||  | |||||| |||||||| ||| | |||||||||| |||||    
T  364105 acttatttgtgaccaaaacaacttaaaaatcaatctgttacaaaccttaaacttaaaggacttctgtttaaccaaaataatttaaa 364020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 9982936 - 9982973
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9982936 aaacttaaaggacttatgtgtgaccaaaataacttaaa 9982973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 2761533 - 2761494
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  2761533 caaacttaaaggacttatgtgtgatcaaaataacttaaaa 2761494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 364203 - 364241
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  364203 caaacttaaaagacttatgtgtgaccaaaataacttaaa 364241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 17342572 - 17342534
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  17342572 caaacttaaaggacttatgtgtgaccgaaataacttaaa 17342534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 17342646 - 17342684
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  17342646 caaacttaaaggacttatgtgtgaccgaaataacttaaa 17342684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 342
Target Start/End: Original strand, 364214 - 364333
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtc 321  Q
    ||||||| ||||||| |||||||||||| | |||| | ||| |||||||||| || ||||| ||   ||| |||||||||| ||||  ||| ||||| |     
T  364214 gacttatgtgtgaccaaaataacttaaagatcaatctattacaaatatcaaatttaaaggaatttgatgtaaccaaaataatttaaggaac-aatctatt 364312  T
Q  322 ataaatctcaaacttaaaaga 342  Q
    |||||| ||||||||||||||    
T  364313 ataaatttcaaacttaaaaga 364333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 21598576 - 21598508
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||| ||||||||||||| || ||||||||||||||  || ||||||| | ||| ||||||||||||    
T  21598576 aaacttaaaggacttatgtgggatcaaaataacttaaaggaccaatctgttacaaacctcaaacttaaa 21598508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 35050712 - 35050769
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| ||||| |||| |||||||| ||| |||||||||||| | ||||||||||||    
T  35050712 accaatctgttacaaatctcaaacttaaagaacttatgtgtgatcgaaataacttaaa 35050769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 13273185 - 13273108
Alignment:
Q  225 acttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataa 304  Q
    |||||| || |||| ||||||||  |||| |||| |||||||||  |||||||| ||| |||||||| ||||||||||||    
T  13273185 acttatgtgggaccaaaataact--aaaatcaatctgttataaacctcaaacttaaagaacttatgtatgaccaaaataa 13273108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 30954959 - 30955078
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa--accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa-actaatct 318  Q
    ||||||||| ||||||| |||||||||||||  |||||| | ||| |||| |||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  30954959 aggacttatgtgtgaccaaaataacttaaaaggaccaatctcttacaaatctcaaacataaaggacttatgtgtgaccaaaataacttaaacactaatct 30955058  T
Q  319 gtcataaatctcaaacttaa 338  Q
     | | ||| |||||||||||    
T  30955059 attacaaacctcaaacttaa 30955078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 30970771 - 30970890
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa--accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa-actaatct 318  Q
    ||||||||| ||||||| |||||||||||||  |||||| | ||| |||| |||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  30970771 aggacttatgtgtgaccaaaataacttaaaaggaccaatctcttacaaatctcaaacataaaggacttatgtgtgaccaaaataacttaaacactaatct 30970870  T
Q  319 gtcataaatctcaaacttaa 338  Q
     | | ||| |||||||||||    
T  30970871 attacaaacctcaaacttaa 30970890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 252169 - 252049
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||||||||||| ||||||||||||| ||  || ||||| |||  | |||||| ||||||||| |||||||||||||||||||||  || |||||    
T  252169 aggacttatttgtgaccaaaataacttaaaagactgatctgttacaaaccttaaacttaaaggacttacgtgtgaccaaaataacttaaatgaccaatct 252070  T
Q  319 gtcataaatctcaaacttaaa 339  Q
     | ||||| ||||||||||||    
T  252069 attataaacctcaaacttaaa 252049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 40286361 - 40286275
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataactt 307  Q
    ||||||| | ||||||| ||||||||||||  | ||||||||||||||  |||||||| |||||||||||||||| |||||||||||    
T  40286361 aggacttctgtgtgaccaaaataacttaaaggaacaatatgttataaacctcaaacttaaaggacttatgtgtgatcaaaataactt 40286275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 46337625 - 46337536
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||| |||| ||||||| |||||||||||| ||  ||||||||| |||  |||||||| ||||||||||||||||||||||||| |||||    
T  46337625 aggatttatctgtgaccaaaataacttaaagaattaatatgttacaaacttcaaacttaaaggacttatgtgtgaccaaaataatttaaa 46337536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 47069651 - 47069562
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| |||||||| ||| ||||||| ||||| |||  |||||||| ||| |||||||||||| ||||||||||||||    
T  47069651 aggacttatgtgtgaccaaaataactaaaagaaccaatttgttacaaaactcaaacttaaagaacttatgtgtgatcaaaataacttaaa 47069562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 7607702 - 7607789
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||||  |||||| |||||||||||||| |||||||||| ||| ||||||||| || ||||||| |  ||| ||||||||||||||    
T  7607702 gacttatgcgtgaccaaaataacttaaaaatcaatatgttacaaacatcaaacttaaatgacttatataagacgaaaataacttaaaa 7607789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 18020038 - 18020125
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||| ||| ||||||||||||  |||||| |||||||||  | |||||| |||||||||||| ||||||||||||||||||    
T  18020038 gacttatgtgtaaccaaaataacttaaacgaccaatctgttataaaccttaaacttaaaggacttatgtttgaccaaaataacttaaa 18020125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 47891336 - 47891423
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||| ||||||||||||  |||||||||||  |||  |||||||  |||||||||||||||| ||||||||||||||    
T  47891336 gacttatgtgtgaccaaaataacttaaaggaccaatatgttgcaaacctcaaactcaaaggacttatgtgtgatcaaaataacttaaa 47891423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 28813969 - 28813931
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28813969 caaacttgaaggacttatgtgtgaccaaaataacttaaa 28813931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 32186692 - 32186769
Alignment:
Q  227 ttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaata 303  Q
    |||| ||| ||| ||||||||||||| | |||||||||| |||  |||||||| ||||||||||||||||||||||||    
T  32186692 ttatgtgtaaccaaaataacttaaaacatcaatatgttacaaacctcaaacttaaaggacttatgtgtgaccaaaata 32186769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 14964961 - 14964923
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  14964961 caaacttaaaggacttatgtgtgaccaaaataacttaaa 14964923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 25848572 - 25848662
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||||| |||||   ||||||||||||| | |||| | ||| |||  |||||||| |||||||||||||| |||||||||||||||||    
T  25848572 aggacttatgtgtgattaaaataacttaaaagatcaatttattacaaacctcaaactttaaggacttatgtgttaccaaaataacttaaaa 25848662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 13903018 - 13903107
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||| ||| ||||||||||||| || ||||||||| |||  ||| |||| ||||| |||||||  ||||||||||||||||    
T  13903018 aggacttatatgtaaccaaaataacttaaaagactaatatgttacaaacctcagacttaaaggatttatgtgcaaccaaaataacttaaa 13903107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 26724141 - 26724073
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||| |||||||||| ||||||||||||||||||||  |||||||| | | |||||| |||||||||    
T  26724141 aaacttaaaggacttatatgtgaccaaaataacttaaatgactaatcttttacaaatcttaaacttaaa 26724073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 28813960 - 28813871
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| ||||||||||||  | |||| | ||| |||| |||||||| ||| |||||| ||||||| ||||||||||||    
T  28813960 aggacttatgtgtgaccaaaataacttaaatgatcaatttattacaaatctcaaacttaaagaacttatatgtgacctaaataacttaaa 28813871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 36900140 - 36900208
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||| |||||| ||||||| ||||||||||||||||  || ||||| | ||||||||||||||||||    
T  36900140 aaacttaaaggacctatgtgtaaccaaaataacttaaaggaccaatctattataaatctcaaacttaaa 36900208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 40209880 - 40209928
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgt 320  Q
    ||||||| || ||||||||||||||||||||| |||||||| |||||||    
T  40209880 caaacttaaacgacttatgtgtgaccaaaatatcttaaaaccaatctgt 40209928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 50332697 - 50332737
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  50332697 tcaaacttaaaggacttatgtgtaaccaaaataacttaaaa 50332737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 252178 - 252139
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  252178 caaacttaaaggacttatttgtgaccaaaataacttaaaa 252139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 25848360 - 25848321
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  25848360 tcaaacttaaaggacttgtgtgtgaccaaaataacttaaa 25848321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 311
Target Start/End: Original strand, 30954958 - 30954989
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||||||||||||||||||||||||||||    
T  30954958 aaggacttatgtgtgaccaaaataacttaaaa 30954989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 311
Target Start/End: Original strand, 30970770 - 30970801
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||||||||||||||||||||||||||||    
T  30970770 aaggacttatgtgtgaccaaaataacttaaaa 30970801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 18020027 - 18020096
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || ||||||||||| ||||||||||||||||  || ||||||| ||||| || |||||||||    
T  18020027 caaacttaaaagacttatgtgtaaccaaaataacttaaacgaccaatctgttataaaccttaaacttaaa 18020096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 25848503 - 25848541
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  25848503 caaacttaaaggacatatgtgtgaccaaaataacttaaa 25848541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 25848512 - 25848602
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||| ||| ||||||| ||||||||||||  |||||| ||||| |||  | ||| || ||||||||||||||||  ||||||||||||||    
T  25848512 aggacatatgtgtgaccaaaataacttaaaggaccaatgtgttacaaacctaaaatttaaaggacttatgtgtgattaaaataacttaaaa 25848602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 26976501 - 26976539
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  26976501 caaacttaaatgacttatgtgtgaccaaaataacttaaa 26976539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 36375019 - 36375105
Alignment:
Q  225 acttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||||||||||| |||||| |||||   |||| | |||||||| |||||||| ||  |||||||  ||| |||||||||||||||    
T  36375019 acttatttgtgaccaaaataatttaaaggtcaatctattataaatctcaaacttaaaaaacttatgcatgatcaaaataacttaaaa 36375105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 36667285 - 36667323
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  36667285 caaacttaaaagacttatgtgtgaccaaaataacttaaa 36667323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 40286370 - 40286332
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  40286370 caaacttaaaggacttctgtgtgaccaaaataacttaaa 40286332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Original strand, 42866096 - 42866126
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaat 302  Q
    |||||||||||||||||||||||||||||||    
T  42866096 caaacttgaaggacttatgtgtgaccaaaat 42866126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 47891325 - 47891363
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  47891325 caaacttaaaagacttatgtgtgaccaaaataacttaaa 47891363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 26724229 - 26724265
Alignment:
Q  284 acttatgtgtgaccaaaataacttaaaactaatctgt 320  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  26724229 acttgtgtatgaccaaaataacttaaaactaatctgt 26724265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 26724238 - 26724313
Alignment:
Q  234 tgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||| ||||||||||||| | ||| ||||| | |  ||||| || ||||||||||||||||| |||||||||||||    
T  26724238 tgaccaaaataacttaaaa-ctaatctgttagagacctcaaatttaaaggacttatgtgtgacgaaaataacttaaa 26724313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 36667196 - 36667137
Alignment:
Q  286 ttatgtgtgaccaaaataactta--aaactaatctgtcataaatctcaaacttaaaagat 343  Q
    |||||||||||||||||||||||  | |||||||| | | ||| ||||||||||||||||    
T  36667196 ttatgtgtgaccaaaataacttaagagactaatctcttacaaacctcaaacttaaaagat 36667137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 39714633 - 39714693
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaa-actaatctgtcataaatctcaaacttaaa 339  Q
    ||||| ||||||||||||||||||||||||| |  ||||||| | ||| ||||||||||||    
T  39714633 aaggatttatgtgtgaccaaaataacttaaacatcaatctgttaaaaacctcaaacttaaa 39714693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 43650057 - 43650017
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||||| ||||| ||||||||||| ||||||||||||||    
T  43650057 tcaaacttaaaggatttatgtgtgacgaaaataacttaaaa 43650017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 29710433 - 29710354
Alignment:
Q  232 tgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||||||||  |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  29710433 tgtgaccaaaataacttaaaggaccaatatgttacaaatatcaaacttaaaggacttatatgtgaccaaaataacttaaa 29710354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 42313007 - 42313095
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||||| |||||| |||||  |||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  42313007 gacttatgtgtgaccaaaataatttaaaggaccaatttgttacaaatatcaaatttaaaggacttatgtgtgaccaaaataacttaaaa 42313095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 27576545 - 27576634
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| ||||||| ||||  ||||||  |||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  27576545 aggacttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtgaccaaaataacttaaa 27576634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 340
Target Start/End: Complemental strand, 11975570 - 11975450
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataactt-aaaactaatctg 319  Q
    ||||||||| |||||||  |||||||||||  | |||||||||| |||  |||||||| ||||||||||||||| | |||||||||| ||||||||| |     
T  11975570 aggacttatgtgtgaccacaataacttaaaggatcaatatgttacaaacctcaaacttaaaggacttatgtgtgtcaaaaataacttaaaaactaattta 11975471  T
Q  320 tcataaatctcaaacttaaaa 340  Q
    | | ||| |||||||||||||    
T  11975470 ttacaaacctcaaacttaaaa 11975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 31453046 - 31453116
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtcataaatctcaaacttaaa 339  Q
    |||||||| ||||||||||||||||| ||||||||||||  ||||||||||| | ||| ||||||||||||    
T  31453046 tcaaacttaaaggacttatgtgtgacaaaaataacttaaataactaatctgttacaaacctcaaacttaaa 31453116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 27280823 - 27280912
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||| ||| ||||||||||||  | |||| |||||| ||  |||||||| ||| |||||||||||||||||||||||||||    
T  27280823 aggacttatgtgttaccaaaataacttaaaggatcaatttgttatgaacctcaaacttaaagtacttatgtgtgaccaaaataacttaaa 27280912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 42312850 - 42312793
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| | ||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  42312850 accaatctattacaaatctcaaacttaaaggacttatgtgtgaccaaaataacttaaa 42312793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 30662244 - 30662188
Alignment:
Q  255 caatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||| |||||||||| |||||||| |||||||||||||| | |||||||||||||||    
T  30662244 caatctgttataaatctcaaacttaaaggacttatgtgtaatcaaaataacttaaaa 30662188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 6222198 - 6222113
Alignment:
Q  226 cttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||| ||||||| |||||||||||| ||| ||| ||||| |||| | |||||| ||| ||||||||||||| ||||||||||||||    
T  6222198 cttatgtgtgaccaaaataacttaaataactaatctgttacaaattttaaacttaaag-acttatgtgtgactaaaataacttaaaa 6222113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 29019380 - 29019342
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29019380 caaacttaaaggacttatgtgtgaccaaaataacttaaa 29019342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 44293989 - 44294075
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||| ||||||||||||  | |||| ||||| |||  |||||| | || |||||||||||||||||||||| |||||    
T  44293989 acttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataatttaaa 44294075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 4048293 - 4048236
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||| |||  ||| |||| ||| |||||||||||||||||||||||||||    
T  4048293 accaatatgttacaaacctcagacttaaagaacttatgtgtgaccaaaataacttaaa 4048236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 6694736 - 6694773
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| |||||||||||||||||||||||||||||||    
T  6694736 aaacttaaaggacttatgtgtgaccaaaataacttaaa 6694773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 11975655 - 11975775
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| ||||||  ||||||||||||  ||||||  |||| |||  |||||||| |||||||||| ||| || |||||||||||||  || |||||    
T  11975655 aggacttatgtgtgacaaaaataacttaaaggaccaatcagttacaaacctcaaacttaaaggacttatctgttacaaaaataacttaaaggaccaatct 11975754  T
Q  319 gtcataaatctcaaacttaaa 339  Q
    ||   ||||||||||||||||    
T  11975755 gtttcaaatctcaaacttaaa 11975775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 29710536 - 29710624
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||||  ||||||||||||  ||||||  |||| |||| |||||||| || ||||||||||| ||||||||||| |||||    
T  29710536 gacttatgtgtgacgaaaataacttaaaggaccaatccgttacaaatctcaaacttaaatgacttatgtgttaccaaaataacctaaaa 29710624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 30869632 - 30869703
Alignment:
Q  240 aaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||||||  |||||| ||||| |||  |||||||| ||| |||||||| ||||||||||||||||||    
T  30869632 aaataacttaaaggaccaatctgttacaaacctcaaacttaaagaacttatgtatgaccaaaataacttaaa 30869703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 4048418 - 4048456
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  4048418 caaacttaaaggacttatgtgtaaccaaaataacttaaa 4048456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 27576536 - 27576574
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  27576536 caaacttaaaggacttatgtgtgaccaaaataacctaaa 27576574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 29710525 - 29710594
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || |||||||||||||| |||||||||||||  || |||| || | ||||||||||||||||    
T  29710525 caaacttaaatgacttatgtgtgacgaaaataacttaaaggaccaatccgttacaaatctcaaacttaaa 29710594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 3198331 - 3198258
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgacc 297  Q
    |||||| || |||| ||||||||||||| |||||| ||||| |||  |||||||| ||| ||||||||||||||    
T  3198331 acttatgtgggaccaaaataacttaaaagaccaatttgttacaaacctcaaacttaaagaacttatgtgtgacc 3198258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 6222198 - 6222142
Alignment:
Q  285 cttatgtgtgaccaaaataacttaa--aactaatctgtcataaatctcaaacttaaa 339  Q
    |||||||||||||||||||||||||  ||||||||||| | |||| | |||||||||    
T  6222198 cttatgtgtgaccaaaataacttaaataactaatctgttacaaattttaaacttaaa 6222142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 11975578 - 11975541
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  11975578 aaacttaaaggacttatgtgtgaccacaataacttaaa 11975541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 27280815 - 27280852
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  27280815 aaacttcaaggacttatgtgttaccaaaataacttaaa 27280852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 29710470 - 29710414
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| | ||| ||||||||||||| ||| ||||| |||||||||||||||||||||    
T  29710470 accaatctattacaaatatcaaacttaaag-acttaagtgtgaccaaaataacttaaa 29710414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 30869487 - 30869446
Alignment:
Q  266 aaatatcaaacttgaaggacttatgtgtgaccaaaataactt 307  Q
    ||||||||||||| |||||||| ||||| |||||||||||||    
T  30869487 aaatatcaaacttaaaggacttgtgtgtaaccaaaataactt 30869446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 6694744 - 6694808
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggac 285  Q
    ||||||||| ||||||| ||||||||||||  |||||||||||| |||  |||||||| ||||||    
T  6694744 aggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacctcaaacttaaaggac 6694808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 26185963 - 26186003
Alignment:
Q  270 atcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||| ||| ||||||||||||||||||||||||| |||||    
T  26185963 atcaatcttaaaggacttatgtgtgaccaaaataatttaaa 26186003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 161527 - 161391
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| ||||||  |||||| |||||  |||||| ||||| |||| |||||||| ||||||||||||||||||||||||| |||||  || |||||    
T  161527 aggacttatgtgtgacaaaaataagttaaaggaccaatctgttacaaatctcaaacttaaaggacttatgtgtgaccaaaataagttaaaggaccaatct 161428  T
Q  319 gtcataaatctcaaacttaaaagatcccaagtataat 355  Q
    || | ||| |||||||||||| || |||| |||||||    
T  161427 gttacaaacctcaaacttaaaggaccccatgtataat 161391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 161619 - 161708
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| ||||||| ||||  |||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||    
T  161619 aggacttatgtgtgaccaaaataacctaaaggaccaatctgttacaaatatcaaatttaaaggacttatgtgtgaccaaaataacttaaa 161708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 161536 - 161467
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| ||||||||||||||||| ||||||| |||||  || ||||||| | ||||||||||||||||    
T  161536 caaacttaaaggacttatgtgtgacaaaaataagttaaaggaccaatctgttacaaatctcaaacttaaa 161467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 161610 - 161648
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  161610 caaacttaaaggacttatgtgtgaccaaaataacctaaa 161648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 7246115 - 7246026
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||| ||| ||||||||||||  |||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||    
T  7246115 aggacttatgtgtaaccaaaataacttaaacgaccaatttgttacaaatatcaaacttaaaggacttatgtctgaccaaaataacttaaa 7246026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 40147074 - 40146948
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctg 319  Q
    |||||| || ||||||| ||||||| |||  | |||| | ||| |||  |||||||| |||||||||||||||||||||||||||||||  || |||||     
T  40147074 aggactcatgtgtgaccaaaataacctaaggatcaatctattacaaacctcaaacttcaaggacttatgtgtgaccaaaataacttaaatgacaaatcta 40146975  T
Q  320 tcataaatctcaaacttaaaagatccc 346  Q
    ||| ||| |||||||||||||||||||    
T  40146974 tcacaaacctcaaacttaaaagatccc 40146948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 40395217 - 40395102
Alignment:
Q  227 ttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcat 323  Q
    |||| ||||||| |||||||||||| ||| ||||||||| |||  |||||||| |||||||||| |||||| |||||||| ||||  || ||||||| |     
T  40395217 ttatgtgtgaccaaaataacttaaagaactaatatgttacaaacctcaaacttaaaggacttatatgtgacaaaaataacctaaaggaccaatctgtaac 40395118  T
Q  324 aaatctcaaacttaaa 339  Q
    ||||||||||||||||    
T  40395117 aaatctcaaacttaaa 40395102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 45038390 - 45038515
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| ||||||| ||||||||||||  |||||| ||||| |||  |||||||| |||||||||| |||||| |||||||||||||  || |||||    
T  45038390 aggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatttgtgacaaaaataacttaaatgaccaatct 45038489  T
Q  319 gtcataaatctcaaacttaaaagatc 344  Q
     | | ||| |||||||||||| ||||    
T  45038490 attacaaacctcaaacttaaaggatc 45038515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 41083177 - 41083088
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||| | ||||||||||||  |||||||||||| |||  |||||||| |||||||||| |||||| |||||||||||||    
T  41083177 aggacttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacttcaaacttaaaggacttatatgtgacaaaaataacttaaa 41083088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 41083268 - 41083388
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| ||||||| ||||||||||||| |||||| |||||  ||  |||||||| || ||| ||| ||||||||||||||||||||  || |||||    
T  41083268 aggacttatgtgtgaccgaaataacttaaaagaccaatctgttacgaacctcaaacttaaatgacatatatgtgaccaaaataacttaaaggaccaatct 41083367  T
Q  319 gtcataaatctcaaacttaaa 339  Q
    || | ||| ||||||||||||    
T  41083368 gttacaaacctcaaacttaaa 41083388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 45038337 - 45038281
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa 309  Q
    |||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||    
T  45038337 accaatctgttataaatctcaaacttaaaggacttatgtgtgaccgaaataacttaa 45038281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 2470124 - 2470211
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||| ||||||||||||  |||||||| ||| |||  ||||| || |||||||||| ||||||||||||||||||||    
T  2470124 gacttatgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaaatttaaaggacttatatgtgaccaaaataacttaaa 2470211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 24684254 - 24684320
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtcataaatctcaaacttaaa 339  Q
    |||||| |||||||||||||||||  |||||||||||||| ||||||| | ||| ||||||||||||    
T  24684254 aaacttaaaggacttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaa 24684320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 45038381 - 45038450
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| |||||||||||||||||||||||||||||||  || ||||||| | ||| ||||||||||||    
T  45038381 caaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaa 45038450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 9999407 - 9999338
Alignment:
Q  227 ttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaac-ttgaaggacttatgtgtga 295  Q
    |||| ||||||| | ||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||    
T  9999407 ttatgtgtgaccaatataacttaaaaaccaatatgttagaaacatcaaactttaaaggacttatgtgtga 9999338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 46196233 - 46196144
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||| |  ||||||| ||||||  |||||| ||||| |||  |||||||| |||||||||| ||||||||||||||||||||    
T  46196233 aggacttatttgagctccaaatatcttaaaggaccaatttgttacaaacgtcaaacttaaaggacttatttgtgaccaaaataacttaaa 46196144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 53863440 - 53863351
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||  ||||||||||||  |||||| ||||| |||| || ||||| || ||||||||||||| ||||||||||||||    
T  53863440 aggacttatgtgtgactaaaataacttaaaggaccaatctgttacaaatctcgaacttaaatgacttatgtgtgatcaaaataacttaaa 53863351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 339
Target Start/End: Complemental strand, 24684134 - 24684055
Alignment:
Q  262 ttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaac--taatctgtcataaatctcaaacttaaa 339  Q
    ||||||||||||||||| ||||| |||| |||||| |||||||||||||||   ||||| | ||||| ||||||||||||    
T  24684134 ttataaatatcaaacttaaaggatttatatgtgacaaaaataacttaaaacatcaatctattataaacctcaaacttaaa 24684055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 2470019 - 2469933
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||| |||||| |||||  |||||||| ||| |||  |||||||| ||||||||| |||||||||||||||||||||    
T  2470019 gacttatatgtgacc-aaataatttaaaggaccaatatattacaaagctcaaacttaaaggacttaggtgtgaccaaaataacttaaa 2469933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 2788017 - 2787950
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || |||||||||||||||||||||||||||||| ||| ||| | ||| || |||||||||    
T  2788017 caaacttaaatgacttatgtgtgaccaaaataacttaaaacaaatatgttacaaaccttaaacttaaa 2787950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 7246141 - 7246086
Alignment:
Q  255 caatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||| ||||| |||||| |||||| |||||||||||||| ||||||||||||||||    
T  7246141 caatctgttacaaatataaaacttaaaggacttatgtgtaaccaaaataacttaaa 7246086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 51950602 - 51950563
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  51950602 caaacttaaaggacttatgtgtgaccaaaataacttaaaa 51950563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 11884707 - 11884649
Alignment:
Q  253 accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||| ||||| |||  |||||||| ||||||||||||||||| ||||||||||||||    
T  11884707 accaatctgttacaaacctcaaacttaaaggacttatgtgtgacaaaaataacttaaaa 11884649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 53863449 - 53863380
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| ||||||||||||||||| |||||||||||||  || ||||||| | ||||||| ||||||||    
T  53863449 caaacttaaaggacttatgtgtgactaaaataacttaaaggaccaatctgttacaaatctcgaacttaaa 53863380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 7246283 - 7246328
Alignment:
Q  266 aaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||    
T  7246283 aaatctcaaacttaaaggacttatgtatgaccaaaataacttaaaa 7246328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 50290239 - 50290186
Alignment:
Q  286 ttatgtgtgaccaaaataacttaaaactaatctgtcataaatctcaaacttaaa 339  Q
    ||||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||    
T  50290239 ttatgtgtgaccaaaataacttaaaaccaatttgtaacaaacctcaaacttaaa 50290186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 2788006 - 2787923
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataactta 308  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| |||  | |||||| || ||||||||||  ||||||||||||||    
T  2788006 gacttatgtgtgaccaaaataacttaaaa-caaatatgttacaaaccttaaacttaaatgacttatgtgcaaccaaaataactta 2787923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 12698010 - 12698046
Alignment:
Q  284 acttatgtgtgaccaaaataacttaaaactaatctgt 320  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12698010 acttatgtgtgaccaaaataacttaaaattaatctgt 12698046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 21322034 - 21322074
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  21322034 tcaaacttaaaggacttatatgtgaccaaaataacttaaaa 21322074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 44057295 - 44057367
Alignment:
Q  240 aaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||||||||  |||||| | ||| |||| |||||||| || ||||||||||| |||||||||||||||||    
T  44057295 aaataacttaaatgaccaatttattacaaatctcaaacttaaatgacttatgtgtaaccaaaataacttaaaa 44057367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 12498752 - 12498713
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  12498752 caaacttaaaggatttatgtgtgaccaaaataacttaaaa 12498713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 41083259 - 41083298
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  41083259 caaacttaaaggacttatgtgtgaccgaaataacttaaaa 41083298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 2788160 - 2788198
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  2788160 aaacttaaaggatttatgtgtgaccaaaataacttaaaa 2788198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 12498743 - 12498653
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||| |||| ||||||| ||||||||||||| | |||||| ||  |||  | |||||| || |||||||||||||| ||||||||||||||    
T  12498743 aggatttatgtgtgaccaaaataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataacttaaaa 12498653  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 12498873 - 12498923
Alignment:
Q  260 tgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||| |||| |||||||| ||||||||||||||||  |||||||||||||    
T  12498873 tgttacaaatctcaaacttaaaggacttatgtgtgattaaaataacttaaa 12498923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 12697156 - 12697114
Alignment:
Q  270 atcaaacttgaaggacttatgtg-tgaccaaaataacttaaaa 311  Q
    ||||||||| ||||||||||||| |||||||||||||||||||    
T  12697156 atcaaacttaaaggacttatgtggtgaccaaaataacttaaaa 12697114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 17232060 - 17231991
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || ||||||||||||| ||||||||||||||  ||| |||||| | ||| ||||||||||||    
T  17232060 caaacttaaaagacttatgtgtgatcaaaataacttaaaagacttatctgttacaaacctcaaacttaaa 17231991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Complemental strand, 17236838 - 17236808
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||||||||||||||||||||    
T  17236838 aaggacttatgtgtgaccaaaataacttaaa 17236808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 26782406 - 26782332
Alignment:
Q  232 tgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaagg-acttatgtgtgaccaaaataa 304  Q
    ||||||| ||||||||||||  |||||| ||||| ||||||||||||| |||| ||||||||||||  |||||||    
T  26782406 tgtgaccaaaataacttaaaggaccaatctgttacaaatatcaaacttaaaggaacttatgtgtgattaaaataa 26782332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 40395231 - 40395162
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| || || ||||||||||||||||||||||||  ||||||| ||| | ||| ||||||||||||    
T  40395231 caaacttaaaagatttatgtgtgaccaaaataacttaaagaactaatatgttacaaacctcaaacttaaa 40395162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 41083186 - 41083148
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  41083186 caaacttaaaggacttatgtgtgatcaaaataacttaaa 41083148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 346
Target Start/End: Original strand, 55617568 - 55617691
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtc 321  Q
    |||||| ||||||  ||||||||||||| || ||||||||  |||  |||||||| |||| |||| |||| |||||||||||||||  ||||||||| |     
T  55617568 acttatgtgtgactaaaataacttaaaagacaaatatgttgcaaacctcaaacttaaagg-cttacgtgttaccaaaataacttaaagaactaatctatt 55617666  T
Q  322 ataaatctcaaacttaaaagatccc 346  Q
    | ||| |||||| ||||| ||||||    
T  55617667 acaaacctcaaatttaaaggatccc 55617691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 346
Target Start/End: Original strand, 55624872 - 55624995
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa--aactaatctgtc 321  Q
    |||||| ||||||  ||||||||||||| || ||||||||  |||  |||||||| |||| |||| |||| |||||||||||||||  ||||||||| |     
T  55624872 acttatgtgtgactaaaataacttaaaagacaaatatgttgcaaacctcaaacttaaagg-cttacgtgttaccaaaataacttaaagaactaatctatt 55624970  T
Q  322 ataaatctcaaacttaaaagatccc 346  Q
    | ||| |||||| ||||| ||||||    
T  55624971 acaaacctcaaatttaaaggatccc 55624995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 9999506 - 9999591
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||  ||||||||||||  |||||| ||||| |||  |||||||| ||  ||| |||||||||||||||||||||||    
T  9999506 gacttatatgtgacaaaaataacttaaatgaccaatctgttacaaacctcaaacttaaa--actaatgtgtgaccaaaataacttaaa 9999591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 24684262 - 24684379
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctg 319  Q
    ||||||||| ||||||  ||||||||| ||||||||| ||||| |||  |||||||| ||| ||||| |||| | | ||||||||||||  || |||||     
T  24684262 aggacttatgtgtgactgaaataactt-aaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtaatc-aaataacttaaaagaccaatcta 24684359  T
Q  320 tcataaatctcaaacttaaa 339  Q
    | ||||| ||||||||||||    
T  24684360 ttataaacctcaaacttaaa 24684379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 25055954 - 25055883
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaaa 340  Q
    |||||||| ||||| |||||||| ||||||||||||||||  || ||||| | | ||| |||||||||||||    
T  25055954 tcaaacttaaaggatttatgtgtcaccaaaataacttaaaggacaaatctattacaaacctcaaacttaaaa 25055883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 45038309 - 45038222
Alignment:
Q  222 aggacttatttgtgacccaaataacttaa-aaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||||| ||||||| |||||||||||   |||||| |||||||||  | ||||||||   ||||||  ||||||||||||||||||||    
T  45038309 aggacttatgtgtgaccgaaataacttaacggaccaatctgttataaaccttaaacttga---acttatacgtgaccaaaataacttaaaa 45038222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 46196365 - 46196452
Alignment:
Q  254 ccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||| ||||| |||  |||||||| |||||||||||| |||| ||||||||||| |  ||| |||||| |||||  |||||||||||    
T  46196365 ccaatctgttacaaacctcaaacttaaaggacttatgtatgacaaaaataacttacatgacttatctgttataaacgtcaaacttaaa 46196452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 339
Target Start/End: Original strand, 36217160 - 36217275
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtcat 323  Q
    ||||||| ||||||| |||||| ||||| | |||| ||||| |||  |||||||| || |||||||||||||||||||||||||||||  ||| ||| |     
T  36217160 gacttatgtgtgaccaaaataatttaaagatcaatctgttacaaacctcaaacttaaaagacttatgtgtgaccaaaataacttaaaatcaatttgttac 36217259  T
Q  324 aaatctcaaacttaaa 339  Q
    ||| ||||||||||||    
T  36217260 aaacctcaaacttaaa 36217275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 31630291 - 31630377
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||| ||||||||||||||||||| | |||  ||  ||||| || |||||||| ||||||||||||||||||||||    
T  31630291 gacttatgtgtgaccaaaataacttaaaaaccaatctattactaacctcaaatttaaaggacttttgtgtgaccaaaataacttaaa 31630377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 36694436 - 36694374
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaaactaatctgtcataaatctcaaacttaaaaga 342  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||| ||||||| ||||||    
T  36694436 aaggacttatatgtgaccaaaataacttaaaactaatctgttacaaatttcaaactcaaaaga 36694374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 1316158 - 1316069
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaaacca-atatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| || || | |||||||||||| | || |||||||| |||  |||||| | |||||||||||||||||||||||||||||||    
T  1316158 aggacttatgtgcgatcaaaataacttaaagaacatatatgttacaaacctcaaacataaaggacttatgtgtgaccaaaataacttaaa 1316069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 9501028 - 9500939
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||  |||||||||||| || | || ||||| |||  |||||||| | ||||||| |||||||||||||||||||||    
T  9501028 aggacttatgtgtgactaaaataacttaaagaagcgatctgttacaaacctcaaacttaagggacttaagtgtgaccaaaataacttaaa 9500939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 25895182 - 25895250
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||| |||||||| ||||||||||||||||||||||  || ||||||| | ||| ||||||||||||    
T  25895182 aaacttaaaggacttttgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaa 25895250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 36694435 - 36694347
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||||| ||||||| ||||||||| ||||| ||| ||||| |||| |||||||  || ||||| |||| |||||| |||||||||||    
T  36694435 aggacttatatgtgaccaaaataactt-aaaactaatctgttacaaatttcaaactcaaaagacttgtgtgcgaccaacataacttaaaa 36694347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 311
Target Start/End: Original strand, 3876951 - 3876982
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||||||||||||||||||||||||||||    
T  3876951 aaggacttatgtgtgaccaaaataacttaaaa 3876982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 33847697 - 33847736
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  33847697 tcaaatttaaaggacttatgtgtgaccaaaataacttaaa 33847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 9501037 - 9500999
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  9501037 caaacttaaaggacttatgtgtgactaaaataacttaaa 9500999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 11791804 - 11791842
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  11791804 caaacttataggacttatgtgtgaccaaaataacttaaa 11791842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 25895037 - 25894968
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| |||||||||| || |||||||||||||||||  || ||| ||| | ||||||||||||||||    
T  25895037 caaacttaaaggacttatatgcgaccaaaataacttaaaggaccaatttgttacaaatctcaaacttaaa 25894968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 29379910 - 29379996
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||| ||||||| |||||| |||||  || ||||||||| |||  |||||||| ||||| ||||||| | |||||||||||||||    
T  29379910 acttatgtgtgaccaaaataatttaaaggactaatatgttacaaacgtcaaacttaaaggaattatgtgaggccaaaataacttaaa 29379996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 31630197 - 31630159
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  31630197 caaacttaaaagacttatgtgtgaccaaaataacttaaa 31630159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 36694519 - 36694557
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  36694519 caaacttaaaggacttatgtgtgaccaaaataatttaaa 36694557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 45388495 - 45388541
Alignment:
Q  297 caaaataacttaaaa-ctaatctgtcataaatctcaaacttaaaaga 342  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||    
T  45388495 caaaataacttaaaaactaatctattataaatctcaaacttaaaaga 45388541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 339
Target Start/End: Complemental strand, 31630186 - 31630070
Alignment:
Q  224 gacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataactta-aaactaatctgtc 321  Q
    ||||||| ||||||| ||||||||||||  | |||| ||||| |||  |||||||| || |||||| ||||||||||||||| ||| |||| ||||| |     
T  31630186 gacttatgtgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaactt-aaagacttaggtgtgaccaaaataatttataaacaaatctatt 31630088  T
Q  322 ataaatctcaaacttaaa 339  Q
    | ||| ||||||||||||    
T  31630087 acaaacctcaaacttaaa 31630070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 39442323 - 39442243
Alignment:
Q  255 caatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaa 333  Q
    |||| ||||| |||| |||||||| || |||||||||||||| ||||||| |||||  |||||||||| |  |||||||||    
T  39442323 caatttgttacaaatctcaaacttaaatgacttatgtgtgacaaaaataatttaaagtactaatctgttacgaatctcaaa 39442243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 3876832 - 3876768
Alignment:
Q  240 aaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataa 304  Q
    ||||||| |||| | |||||||||| | |  |||| ||| |||||||||||||||||||||||||    
T  3876832 aaataacataaagatcaatatgttacagacctcaatcttaaaggacttatgtgtgaccaaaataa 3876768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 4188693 - 4188657
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaa 309  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4188693 aaacttaaaggacttgtgtgtgaccaaaataacttaa 4188657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 31630291 - 31630319
Alignment:
Q  283 gacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||||||||||||||||||||||||||    
T  31630291 gacttatgtgtgaccaaaataacttaaaa 31630319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 33847707 - 33847771
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggac 285  Q
    ||||||||| ||||||| ||||||||||||  | |||||||||| ||| ||||||||| ||||||    
T  33847707 aggacttatgtgtgaccaaaataacttaaaggaacaatatgttacaaacatcaaacttaaaggac 33847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 36217160 - 36217220
Alignment:
Q  283 gacttatgtgtgaccaaaataacttaaaact-aatctgtcataaatctcaaacttaaaaga 342  Q
    |||||||||||||||||||||| |||||  | ||||||| | ||| |||||||||||||||    
T  36217160 gacttatgtgtgaccaaaataatttaaagatcaatctgttacaaacctcaaacttaaaaga 36217220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 1149 - 1238
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| ||||||| ||||  ||||||  |||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  1149 aggacttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtgaccaaaataacttaaa 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 1140 - 1178
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  1140 caaacttaaaggacttatgtgtgaccaaaataacctaaa 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 1173132 - 1173074
Alignment:
Q  283 gacttatgtgtgaccaaaataactt-aaaactaatctgtcataaatctcaaacttaaaa 340  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  1173132 gacttatgtgtgaccaaaataacttaaaaactaatctgttataaacctcaaacttaaaa 1173074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 40892516 - 40892602
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||| | ||||||||||||  ||||| ||||| |||  ||||| || |||||||||||||||||||||||||||||||    
T  40892516 gacttatgtgtgatcgaaataacttaaagtccaatctgttacaaacctcaaatttaaaggacttatgtgtgaccaaaataacttaaa 40892602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 33650522 - 33650401
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa--accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatc 317  Q
    ||||||||  ||||||| |||||||||||||  |||||||||||| | |   ||||||| || |||||||||| || ||||||||||||||  || ||||    
T  33650522 aggacttacgtgtgaccaaaataacttaaaaggaccaatatgttacataccacaaacttaaatgacttatgtgggaacaaaataacttaaaggaccaatc 33650423  T
Q  318 tgtcataaatctcaaacttaaa 339  Q
    ||| ||||| ||||||||||||    
T  33650422 tgttataaacctcaaacttaaa 33650401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 7490032 - 7489962
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||||| ||||| |||||||||||||||||||||||||  | |||||||| | ||| ||||||||||||    
T  7490032 tcaaacttaaaggatttatgtgtgaccaaaataacttaaatgattaatctgttacaaacctcaaacttaaa 7489962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 52913212 - 52913173
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  52913212 tcaaacttaaaggacttatgtgtgaccaaaataacttaaa 52913173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 52913156 - 52913031
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatg-ttataaatatcaaactt-gaaggacttatgtgtgaccaaaataacttaaa--actaat 316  Q
    ||||||||| |||||||  |||||||||||  |||||| || ||| |||  ||||||||  ||||| |||||||||||||||||||||||||  ||||||    
T  52913156 aggacttatgtgtgaccagaataacttaaatgaccaatctgtttacaaacctcaaacttaaaaggatttatgtgtgaccaaaataacttaaaggactaat 52913057  T
Q  317 ctgtcataaatctcaaacttaaaaga 342  Q
    |||| | |||  ||||||||||||||    
T  52913056 ctgttacaaacttcaaacttaaaaga 52913031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 2633538 - 2633597
Alignment:
Q  282 ggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||||| ||||||||||||||||||||  || ||||||||| ||| ||||||||||||    
T  2633538 ggacttatatgtgaccaaaataacttaaatgaccaatctgtcacaaacctcaaacttaaa 2633597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 18981122 - 18981086
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataactta 308  Q
    ||||||| |||||||||||||||||||||||||||||    
T  18981122 caaacttaaaggacttatgtgtgaccaaaataactta 18981086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 341
Target Start/End: Original strand, 18608793 - 18608915
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| | ||| | ||||||||||||| | |||| ||||| ||| ||||||| | || ||||||||||||| ||||||| ||||||  || ||| |    
T  18608793 aggacttatctatgatcaaaataacttaaaatatcaatctgttacaaacatcaaacgtaaacgacttatgtgtgatcaaaatagcttaaaggacaaattt 18608892  T
Q  319 gtcataaatctcaaacttaaaag 341  Q
    || ||||| || |||||||||||    
T  18608893 gttataaaccttaaacttaaaag 18608915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 33650531 - 33650492
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  33650531 caaacttaaaggacttacgtgtgaccaaaataacttaaaa 33650492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 1173132 - 1173078
Alignment:
Q  224 gacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaactt 278  Q
    ||||||| ||||||| ||||||||||||||| ||| |||||||||  ||||||||    
T  1173132 gacttatgtgtgaccaaaataacttaaaaactaatctgttataaacctcaaactt 1173078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 18204930 - 18205016
Alignment:
Q  225 acttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||| ||||||| ||||||  |||||| |||||||||| |||  |||||||| || ||  ||||| |||| ||||||||||||||    
T  18204930 acttatgtgtgaccaaaataatctaaaaatcaatatgttacaaacctcaaacttaaaagatctatgtatgactaaaataacttaaaa 18205016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 18608710 - 18608672
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  18608710 caaacttaaaggacttaagtgtgaccaaaataacttaaa 18608672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 34173381 - 34173316
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggact 286  Q
    ||||||||||||| ||| ||||||||||||  |||||| ||||| ||| ||||||||| |||||||    
T  34173381 aggacttatttgtaaccaaaataacttaaaggaccaatctgttacaaacatcaaacttaaaggact 34173316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 18608701 - 18608629
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgt 293  Q
    ||||||||  ||||||| |||||||||||| || |||| ||||| |||  |||||||| ||||||||||||||    
T  18608701 aggacttaagtgtgaccaaaataacttaaagaatcaatctgttacaaacctcaaacttaaaggacttatgtgt 18608629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 6220397 - 6220486
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||| |||| |||||||| ||| ||||||||||||| |||||||||||||    
T  6220397 aggacttatgtgtgaccacaataacttaaagtaccaatctgttacaaatctcaaacttaaagaacttatgtgtgacaaaaataacttaaa 6220486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 41151528 - 41151439
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| ||||||||||||  |||||| |||||  ||  |||||||| |||||||||||||||| ||||||||||||||    
T  41151528 aggacttatgtgtgaccaaaataacttaaaggaccaatctgttactaaactcaaacttaaaggacttatgtgtgatcaaaataacttaaa 41151439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 41151680 - 41151741
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||||||||||||||||||||||||||||  |||||||||| | ||| ||||||||||||    
T  41151680 aaggacttatgtgtgaccaaaataacttaaaggactaatctgttacaaacctcaaacttaaa 41151741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 6220389 - 6220457
Alignment:
Q  273 aaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||| ||||||||||||||||||| |||||||||||  || ||||||| | ||||||||||||||||    
T  6220389 aaacttaaaggacttatgtgtgaccacaataacttaaagtaccaatctgttacaaatctcaaacttaaa 6220457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 24909618 - 24909738
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    |||||||||  |||||| |||||| |||||  |||||| || || |||  |||||||| |||||||||||||||| ||||||||||||||  || ||| |    
T  24909618 aggacttatgcgtgaccaaaataatttaaaggaccaatctgctacaaacctcaaacttaaaggacttatgtgtgatcaaaataacttaaaggaccaattt 24909717  T
Q  319 gtcataaatctcaaacttaaa 339  Q
    || | ||||||||||||||||    
T  24909718 gttacaaatctcaaacttaaa 24909738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 27052613 - 27052697
Alignment:
Q  227 ttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||| ||||| | ||||||||||||  |||||| |||||||||  |||||||| ||||||||||||| ||| |||||||||||||    
T  27052613 ttatgtgtgatcaaaataacttaaaggaccaatctgttataaacctcaaacttaaaggacttatgtgcgacaaaaataacttaaa 27052697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 9400041 - 9400166
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa--actaatct 318  Q
    ||||||||| ||||||| ||||||||||||  ||||| ||| || |||  |||||||  ||| | |||||||||||||||||||||||||  |  ||| |    
T  9400041 aggacttatgtgtgaccaaaataacttaaaggaccaacatgctacaaacctcaaactcaaagaatttatgtgtgaccaaaataacttaaacgatcaatat 9400140  T
Q  319 gtcataaatctcaaacttaaaagatc 344  Q
    || | ||| |||||||||||||||||    
T  9400141 gttacaaacctcaaacttaaaagatc 9400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 20209477 - 20209563
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||| ||||||||||||  | |||| ||||| |||  |||||| | || |||||||||||||||||||||| |||||    
T  20209477 acttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataatttaaa 20209563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 20229185 - 20229271
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||| ||||||||||||  | |||| ||||| |||  |||||| | || |||||||||||||||||||||| |||||    
T  20229185 acttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataatttaaa 20229271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 24083264 - 24083334
Alignment:
Q  240 aaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||| |||| ||||| |||  |||||||| || | ||||||||||| ||||||||||||||    
T  24083264 aaataacttaaaaatcaatctgttacaaacctcaaacttaaaagccttatgtgtgatcaaaataacttaaa 24083334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27052560 - 27052502
Alignment:
Q  252 aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| | ||| |||| |||||||| |||||||||||||||||| ||||||||||||    
T  27052560 aaccaatctattacaaatctcaaacttaaaggacttatgtgtgaccgaaataacttaaa 27052502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 27128006 - 27127968
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  27128006 caaacttaaaggacttatgtgtgaccaaaataacttaaa 27127968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 309
Target Start/End: Complemental strand, 27052531 - 27052443
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaa 309  Q
    ||||||||| ||||||| ||||||||||||  |||||| ||||| |||  | |||||| || ||||||| |||||| ||||||||||||    
T  27052531 aggacttatgtgtgaccgaaataacttaaaggaccaatgtgttacaaaccttaaacttaaatgacttatatgtgactaaaataacttaa 27052443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 29427960 - 29427999
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  29427960 caaacttaaaggacttatgtatgaccaaaataacttaaaa 29427999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 9400040 - 9400070
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||||||||||||||||||||    
T  9400040 aaggacttatgtgtgaccaaaataacttaaa 9400070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 27127997 - 27127911
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaa-aaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||||| ||||||| |||||||||||| || |||| ||||| |||  |||||||| ||  |||||||||||| ||||||||||||||    
T  27127997 aggacttatgtgtgaccaaaataacttaaagaatcaatctgttacaaac-tcaaacttaaa--acttatgtgtgatcaaaataacttaaa 27127911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 27128092 - 27128209
Alignment:
Q  225 acttatttgtgacccaaataacttaaaa--accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataa-cttaaaactaatctgtc 321  Q
    |||||| ||||||| |||||||||||||  | |||| ||||| |||  | |||||| |||||||| ||||||| |||||||| || ||||| ||||| |     
T  27128092 acttatgtgtgaccaaaataacttaaaaagatcaatttgttagaaaccttaaacttaaaggacttgtgtgtgatcaaaataacctaaaaaccaatctatt 27128191  T
Q  322 ataaatctcaaacttaaa 339  Q
    | ||| ||||||||||||    
T  27128192 acaaacctcaaacttaaa 27128209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Complemental strand, 41151529 - 41151499
Alignment:
Q  280 aaggacttatgtgtgaccaaaataacttaaa 310  Q
    |||||||||||||||||||||||||||||||    
T  41151529 aaggacttatgtgtgaccaaaataacttaaa 41151499  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 41151611 - 41151649
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  41151611 caaacttaaaggacttatgtgtgaccaaaagaacttaaa 41151649  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 15563917 - 15563877
Alignment:
Q  271 tcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  15563917 tcaaacttaaaagacttatgtgtgactaaaataacttaaaa 15563877  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 27052613 - 27052668
Alignment:
Q  286 ttatgtgtgaccaaaataacttaaa--actaatctgtcataaatctcaaacttaaa 339  Q
    |||||||||| ||||||||||||||  || ||||||| ||||| ||||||||||||    
T  27052613 ttatgtgtgatcaaaataacttaaaggaccaatctgttataaacctcaaacttaaa 27052668  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 12171 - 12054
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtc 321  Q
    ||||||| | ||||||  |||||||||||  |||||| ||||| |||| |||||||| ||||   ||||||||||||||||||||| |||| ||| | |     
T  12171 aggacttgtgtgtgacaaaaataacttaaggaccaatttgttacaaatctcaaacttaaagggtatatgtgtgaccaaaataacttgaaaccaatttatt 12072  T
Q  322 ataaatctcaaacttaaa 339  Q
    | ||| ||||||||||||    
T  12071 acaaacctcaaacttaaa 12054  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 12278 - 12377
Alignment:
Q  240 aaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaactaatctgtcataaatctcaaacttaaa 339  Q
    |||||| ||||| |||||| ||||| |||  |||||||| |  ||||||| ||||| |||||||||||||||  ||||| | | ||| ||||||||||||    
T  12278 aaataagttaaagaccaatctgttacaaacctcaaacttaattgacttatatgtgatcaaaataacttaaaatcaatctattacaaacctcaaacttaaa 12377  T

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Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 12180 - 12112
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaa-aactaatctgtcataaatctcaaacttaaa 339  Q
    ||||||| |||||||| |||||||| ||||||||||||  || ||| ||| | ||||||||||||||||    
T  12180 caaacttaaaggacttgtgtgtgacaaaaataacttaaggaccaatttgttacaaatctcaaacttaaa 12112  T

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Target: scaffold0157 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 21725 - 21764
Alignment:
Q  272 caaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  21725 caaacttaaaggatttatgtgtgaccaaaataacttaaaa 21764  T

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Target: scaffold0157; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 21604 - 21554
Alignment:
Q  260 tgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaa 310  Q
    ||||| |||| |||||||| ||||||||||||||||  |||||||||||||    
T  21604 tgttacaaatctcaaacttaaaggacttatgtgtgattaaaataacttaaa 21554  T

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Target: scaffold0157; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 21734 - 21824
Alignment:
Q  222 aggacttatttgtgacccaaataacttaaaa-accaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa 311  Q
    |||| |||| ||||||| ||||||||||||| | |||||| ||  |||  | |||||| || |||||||||||||| ||||||||||||||    
T  21734 aggatttatgtgtgaccaaaataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataacttaaaa 21824  T

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