View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_23 (Length: 362)
Name: NF8132_low_23
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 54606253 - 54605913
Alignment:
| Q |
18 |
aatttgtacacaatttttctgcttttaggagatgttcagttttgt--agaccttgcagtttgtggtgcttcaatgcgtcactagtttcaattgtagatag |
115 |
Q |
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| T |
54606253 |
aatttgtacacaatttttctgctttgaggagatgttcagttttgtgtagaccttgcagtttgtggtgcttcaatgcgtcactagtttcaattgtagatag |
54606154 |
T |
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| Q |
116 |
taacttgttataccatagccatgttaacgaattag----tctttctttcattgcatatgacaagtaacctttgaatgagttaaagaattagtcaatttcc |
211 |
Q |
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| T |
54606153 |
taacttgttataccatagccatgttaacgaattagctagtctttctttcattccatatgacaagtaacctttgaatgagttaaagaattagccaatttct |
54606054 |
T |
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| Q |
212 |
tggtcatttttatgaattgttcttgggtaactaaagccagttatttaacttacctagtgaatttgagccaattatttatttacacgcaccataagtaact |
311 |
Q |
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| T |
54606053 |
tggtcatttttatgaattgttcttgggtaactaaagccatttatttagctaggctagtgaatttgagccaattatttatttacacgcaccataagtaact |
54605954 |
T |
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| Q |
312 |
atgacaggaaatttaagcatgctagtaaattgtggcctttg |
352 |
Q |
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| T |
54605953 |
atgacagggaatttaagcatgctagtaaattgtggcctttg |
54605913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 34386447 - 34386501
Alignment:
| Q |
84 |
ttcaatgcgtcactagtttcaattgtagatagtaa-cttgttataccatagccat |
137 |
Q |
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| T |
34386447 |
ttcaatgtgtcactagtttcaattgtggatagtaaccttgttataccatagccat |
34386501 |
T |
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