View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_24 (Length: 350)
Name: NF8132_low_24
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 30056341 - 30056671
Alignment:
| Q |
5 |
caactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgga |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056341 |
caactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgga |
30056440 |
T |
|
| Q |
105 |
aaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttggcgacgaaccttcttacta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30056441 |
aaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttggcgactaaccttcttacta |
30056540 |
T |
|
| Q |
205 |
ttatttcctttaactcctctgtacggataacgtgctactgtggcaattccaccgtttactaagacgaattcaaaagcatcaatcaaataaccaccgttgc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056541 |
ttatttcctttaactcctctgtacggataacttgcttctgtggcaattccaccgttttctaagacgaattcaaaagcatcaatcaaataaccaccgttgc |
30056640 |
T |
|
| Q |
305 |
atctattttgccaattacttctgacatgatc |
335 |
Q |
| |
|
||| |||| |||||||||||||||| |||| |
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| T |
30056641 |
atccatttgtccaattacttctgacacgatc |
30056671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 29746952 - 29746672
Alignment:
| Q |
5 |
caactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgga |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||| ||| ||| || |
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| T |
29746952 |
caactattgttacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatttgagcatacctctcatatcaatattaaccga |
29746853 |
T |
|
| Q |
105 |
aaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttggcgacgaaccttcttacta |
204 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||||||||||| |||||||||||||||| || | |||||||||| |
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| T |
29746852 |
aaccggttgattggccacaactttaagtagtgagtcctcgctatttttagggacttgctcgtagcccttaatctgaacttggtgatgcaccttcttac-- |
29746755 |
T |
|
| Q |
205 |
ttatttcctttaactcctctgtacggataacgtgctactgtggcaattccaccgtttactaagacgaattcaaaagcatcaatc |
288 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||| |||||||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
29746754 |
-tatttcctttaactcccttgtatggataacttgcttctgtggcaattccaccgttttctaaattgaatttaaaagcatcaatc |
29746672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 29733277 - 29733456
Alignment:
| Q |
5 |
caactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgga |
104 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||| || || ||||| |||||||| || |
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|
| T |
29733277 |
caactatggttaaagcatggtttggcttagttccacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatatcaataccaaccga |
29733376 |
T |
|
| Q |
105 |
aaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaactt |
184 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||| || ||||||||||| ||||||| |
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| T |
29733377 |
aaccggttgattggccacagctttaagtagtgaatcttcactattactagggacttcttcatagctcttaatttgaactt |
29733456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 29729941 - 29730076
Alignment:
| Q |
5 |
caactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgga |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||| ||| || || ||||| |||| ||| || |
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|
| T |
29729941 |
caactattgttacagcatggtttggcttagttctacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatatcaatactaaccga |
29730040 |
T |
|
| Q |
105 |
aaccggttgattggccacaactttaagcagtgaatc |
140 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
29730041 |
aaccggttgattggccacagctttaagcagtgaatc |
29730076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 30072861 - 30072992
Alignment:
| Q |
5 |
caactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttat----atcgataccaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||| |||| || |
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| T |
30072861 |
caactattgttacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgaacatacctctcataaacatcaatactaa |
30072960 |
T |
|
| Q |
101 |
cggaaaccggttgattggccacaactttaagc |
132 |
Q |
| |
|
| |||||||||||||| |||||| || ||||| |
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|
| T |
30072961 |
ccgaaaccggttgattagccacagctataagc |
30072992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 29934916 - 29935001
Alignment:
| Q |
5 |
caactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttata |
90 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||||||||||| |||||||||| ||||||||||||| |||||| |||||| |
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| T |
29934916 |
caactattgttacagcatggtttccctgagttccacattctcctgtagatattccactcgagtaaaatctgaacatacctcttata |
29935001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 29606417 - 29606534
Alignment:
| Q |
213 |
tttaactcctctgtacggataacgtgctactgtggcaattccaccgtttactaagacgaattcaaaagcatcaatcaaataaccaccgttgcatctattt |
312 |
Q |
| |
|
||||||||| |||| ||||||| |||| |||||||||||||||||||| |||| | ||||| ||||||||||||| || |||||| || |||| ||| |
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|
| T |
29606417 |
tttaactcccttgtatggataacttgcttctgtggcaattccaccgttttctaaaatgaatttaaaagcatcaatcttattaccaccattacatccattg |
29606516 |
T |
|
| Q |
313 |
tgccaattacttctgaca |
330 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
29606517 |
gtccaattacttgtgaca |
29606534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 34759009 - 34759101
Alignment:
| Q |
126 |
tttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttggcgacgaaccttcttactattatttcctttaactcc |
221 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||| || ||||||| ||||||||||||||| |
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|
| T |
34759009 |
tttaagtagtgaatcctcactatttttagggacttgcttatagctcttaatccaaacttggtgacacacattcttac---aatttcctttaactcc |
34759101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 31194201 - 31194252
Alignment:
| Q |
20 |
catggtttggcttagttccacattctcctgtaaatattccacttgagtaaaa |
71 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
31194201 |
catggtctagctcagttccacattctcctgtataaattccacttgagtaaaa |
31194252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 31185387 - 31185425
Alignment:
| Q |
33 |
agttccacattctcctgtaaatattccacttgagtaaaa |
71 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
31185387 |
agttccacattctcctgtataaattccacttgagtaaaa |
31185425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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