View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8132_low_3 (Length: 385)

Name: NF8132_low_3
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8132_low_3
NF8132_low_3
[»] chr5 (1 HSPs)
chr5 (17-357)||(24545507-24545848)
[»] chr2 (1 HSPs)
chr2 (285-335)||(4451037-4451087)
[»] chr1 (6 HSPs)
chr1 (285-334)||(36758859-36758908)
chr1 (285-334)||(36759643-36759692)
chr1 (285-334)||(36760426-36760475)
chr1 (285-334)||(36761209-36761258)
chr1 (285-334)||(36761992-36762041)
chr1 (285-334)||(36766206-36766255)
[»] chr8 (1 HSPs)
chr8 (285-357)||(24987759-24987831)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 24545848 - 24545507
Alignment:
Q  17 cccaacaccttagacaaaccatcagcacaagaaagcaatccacatatagttcacctgtctccctagccttgaagaccatctcttcctttaccttcttgat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24545848 cccaacaccttagacaaaccatcagcacaagaaagcaatccacatatagttcacctgtctccctggccttgaagaccatctcttcctttaccttcttgat 24545749  T
Q  117 ggacgaggcatcacaacccgcagccaaacccttcggcttctccctcgagatgtccctctccgcataaacacctggatcaccaactgcagccactaaaagt 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24545748 ggacgtggcatcacaacccgcagccaaacccttcggcttctccctcgagatgtccctctccgcataaacacctggatcaccaactgcagccactaaaagt 24545649  T
Q  217 gtgttgc-aatgaattaaggaagaggctagcatatcccgacgaccctcctcagttagaccagcaggaacaaataaaacatactctaagaatatatgttga 315  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24545648 gtgttgcaaatcaattaaggaagaggctagcatatcccgacgaccctcctcagttagaccagcaggaacaaataaaacatactctaagaacatatgttga 24545549  T
Q  316 ggatagactcctcctttgatactcgtagtgattgccttcctc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24545548 ggatagactcctcctttgatactcgtagtgattgccttcctc 24545507  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 4451037 - 4451087
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttgat 335  Q
    ||||||||||||||||||||||| | ||||| || ||||||||||||||||    
T  4451037 aaataaaacatactctaagaataaaggttgacgagagactcctcctttgat 4451087  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36758908 - 36758859
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttga 334  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||| ||||    
T  36758908 aaataaaacatactctaaggataaaagttgaggagagactcctcccttga 36758859  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36759692 - 36759643
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttga 334  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||| ||||    
T  36759692 aaataaaacatactctaaggataaaagttgaggagagactcctcccttga 36759643  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36760475 - 36760426
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttga 334  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||| ||||    
T  36760475 aaataaaacatactctaaggataaaagttgaggagagactcctcccttga 36760426  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36761258 - 36761209
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttga 334  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||| ||||    
T  36761258 aaataaaacatactctaaggataaaagttgaggagagactcctcccttga 36761209  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36762041 - 36761992
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttga 334  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||| ||||    
T  36762041 aaataaaacatactctaaggataaaagttgaggagagactcctcccttga 36761992  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36766255 - 36766206
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttga 334  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||| ||||    
T  36766255 aaataaaacatactctaaggataaaagttgaggagagactcctcccttga 36766206  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 357
Target Start/End: Complemental strand, 24987831 - 24987759
Alignment:
Q  285 aaataaaacatactctaagaatatatgttgaggatagactcctcctttgatactcgtagtgattgccttcctc 357  Q
    |||| ||||||||||||| || | |||||||||| | | |||||||||||||||| ||| | |||| ||||||    
T  24987831 aaatgaaacatactctaacaacaaatgttgaggacaaaatcctcctttgatactcctagagtttgctttcctc 24987759  T

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