View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_33 (Length: 271)
Name: NF8132_low_33
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 7974173 - 7973929
Alignment:
| Q |
16 |
caaaaacttcttcctattctcagcatacacgtgtccatcccatccacgcttcaccaaatcaccacccaactcaaccgcagccttaaccgtttcctcagca |
115 |
Q |
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| T |
7974173 |
caaaaacttcttcctattctcagcatacacgtgtccatcccatccacgtttcaccaaattaccacccaattcaaccgcagccttaaccgtttcctccacg |
7974074 |
T |
|
| Q |
116 |
ctatcatgcgccgagtcaatgattcctaatcttaccgcctccttcgctgtcaccttcgccgcctgcatcacaatcttcctcctcgccgcagcatcaccaa |
215 |
Q |
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||||||||||||||||||| || || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7974073 |
ctatcatgcgccgagtcaacaatccccaatctcaccgcctccttcgccgtcaccttcgccgcctgcatcacaatcttcctcctcgccgcagcatcaccaa |
7973974 |
T |
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| Q |
216 |
ccttcgcatcaacaatcgcaataaaccacgccggaatcacatgat |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7973973 |
ccttcgcatcaacaatcgcaataaaccacgccggaatcacatgat |
7973929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 7966704 - 7966948
Alignment:
| Q |
16 |
caaaaacttcttcctattctcagcatacacgtgtccatcccatccacgcttcaccaaatcaccacccaactcaaccgcagccttaaccgtttcctcagca |
115 |
Q |
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||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| | |
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| T |
7966704 |
caaaagcttcttcctattctcagcatacacgtctccattcaatccacgcttcaccaaatcaccgctcaattcaaccgcagccttaaccgtttcctcaacg |
7966803 |
T |
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| Q |
116 |
ctatcatgcgccgagtcaatgattcctaatcttaccgcctccttcgctgtcaccttcgccgcctgcatcacaatcttcctcctcgccgcagcatcaccaa |
215 |
Q |
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||||||||||||||||||| ||| || ||||| |||||||||| || ||||||||| |||||| | |||||||| || || | ||| |||||||||| |
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| T |
7966804 |
ctatcatgcgccgagtcaacgatccccaatctcaccgcctcctcagccgtcaccttctccgcctccgtcacaatcctcttcattgccaacgcatcaccaa |
7966903 |
T |
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| Q |
216 |
ccttcgcatcaacaatcgcaataaaccacgccggaatcacatgat |
260 |
Q |
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|||| || ||||||| |||| |||||| |||||||| ||||||| |
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| T |
7966904 |
cctttgcttcaacaacagcaacaaaccatgccggaataacatgat |
7966948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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