View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_34 (Length: 255)
Name: NF8132_low_34
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 28580590 - 28580700
Alignment:
| Q |
13 |
aatatctgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatcttttcccactcaaaatcatca |
112 |
Q |
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| T |
28580590 |
aatatctgctgataagggagcaatgtccatgatgtcagcccaacttgcaagctcaatgggaagcacagaatcacctatcttttcccactcaagatcatca |
28580689 |
T |
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| Q |
113 |
tcagtatatat |
123 |
Q |
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||||||||||| |
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| T |
28580690 |
tcagtatatat |
28580700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 28404125 - 28403908
Alignment:
| Q |
19 |
tgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatc---------ttttcccactcaaaatca |
109 |
Q |
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| T |
28404125 |
tgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttttccaatttttccactcagaatcg |
28404026 |
T |
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| Q |
110 |
tcatcagtatatatgtcataactgtgtgtcaacattaatgattctgctttctcattagcaagaaattgcaaacatgtttctgtggcaactgcttttactt |
209 |
Q |
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| T |
28404025 |
tctt---tatatatgtcatgcctgtgtgtgaac---aatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttactt |
28403932 |
T |
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| Q |
210 |
cagcccattctaaaaaagtattaa |
233 |
Q |
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| T |
28403931 |
ctgcccattctgaaaaagcattaa |
28403908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 28585662 - 28585888
Alignment:
| Q |
10 |
aagaatatctgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatcttttccca---------c |
100 |
Q |
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|||| ||| |||||||||||||| |||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||| | |
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| T |
28585662 |
aagagtatgtgctgataagggagaaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttttccaatttttccac |
28585761 |
T |
|
| Q |
101 |
tcaaaatcatcatcagtatatatgtcataactgtgtgtcaacattaatgattctgctttctcattagcaagaaattgcaaacatgtttctgtggcaactg |
200 |
Q |
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| T |
28585762 |
tcagaatcgtctt---tatatatgtcatgcctgtgtgtgaaca---atgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactg |
28585855 |
T |
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| Q |
201 |
cttttacttcagcccattctaaaaaagtattaa |
233 |
Q |
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| T |
28585856 |
ctcttacttctgcccattctgaaaaagcattaa |
28585888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 28417673 - 28417597
Alignment:
| Q |
19 |
tgctgataagggagcaatgtccatgatgtcagcccaactagcaagctcaataggaagcacagaatcacctatctttt |
95 |
Q |
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||||||||||||||||||| | ||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
28417673 |
tgctgataagggagcaatgacgatgatatcagcccacttagcaagctcaatgtgaagcacagaatcacctatctttt |
28417597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 28417550 - 28417478
Alignment:
| Q |
148 |
tgattctgctttctcattagcaagaaattgcaaacatgtttctgtggcaactgcttttacttcagcccattct |
220 |
Q |
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| T |
28417550 |
tgattctgctttctcattagcaagaaattgtaaagctgtttttgtgacaacagcttttacttctgcccattct |
28417478 |
T |
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