View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_38 (Length: 245)
Name: NF8132_low_38
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36200069 - 36199854
Alignment:
| Q |
1 |
actaaaatcagcagttgcaatctcattaacaagttcaatattatccccaacatccataataccccatacataaacagacccattaacaagtcccacagtc |
100 |
Q |
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| T |
36200069 |
actaaaatcagcatttgcaatctcattaacaagttcaatattatccccaacatccataataccccatccataaacagacccattaacaagtcccacagtc |
36199970 |
T |
|
| Q |
101 |
ttcc-tattaaacgtcttactcatccgatattggcaagaaacaaaagttgctaaagacaaaccaatcataaacctaactactatatatccagaagcatca |
199 |
Q |
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| T |
36199969 |
ttccctattaaacgtcttactcgtccgatattggcaagaaacaaaagttgctaaagacaaaccaatcatgaacctaactactatatatccagaagcatca |
36199870 |
T |
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| Q |
200 |
ttcaaaatgaaataca |
215 |
Q |
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|||||||||||||||| |
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| T |
36199869 |
ttcaaaatgaaataca |
36199854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 48674187 - 48674302
Alignment:
| Q |
79 |
cccattaacaagtcccacagtcttcctattaaacgtcttactcatccgatattggcaagaaacaaaagttgctaaagacaaaccaatcataaacctaact |
178 |
Q |
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| T |
48674187 |
cccattaacaagtccaataatcttcctattaaacat---actcatccaatattggtaagaaacaaaagttgccaaagagaaaccaatcatgaacctaact |
48674283 |
T |
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| Q |
179 |
actatatatccagaagcat |
197 |
Q |
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| T |
48674284 |
gctatacatccagaagcat |
48674302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 21371773 - 21371647
Alignment:
| Q |
104 |
ctattaaacgtcttactcatccgatattggcaagaaacaaaagttgctaaagacaaaccaatcataaacctaactactatatatccagaagcatcattca |
203 |
Q |
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| T |
21371773 |
ctattaaacatagtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcat-tttca |
21371675 |
T |
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| Q |
204 |
--aaatgaaatacagaacactgttggtg |
229 |
Q |
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| T |
21371674 |
acaaatgacatacaaaacactgttggtg |
21371647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 21385784 - 21385910
Alignment:
| Q |
104 |
ctattaaacgtcttactcatccgatattggcaagaaacaaaagttgctaaagacaaaccaatcataaacctaactactatatatccagaagcatcattca |
203 |
Q |
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||||||||| | ||||||||| |||||| || |||||||| ||||| ||||| ||||||||||||||||||||| ||||||| |||| ||||| |||| |
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| T |
21385784 |
ctattaaacatagtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcat-tttca |
21385882 |
T |
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| Q |
204 |
--aaatgaaatacagaacactgttggtg |
229 |
Q |
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|||||| ||||| ||||||||||||| |
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| T |
21385883 |
acaaatgacatacaaaacactgttggtg |
21385910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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