View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_42 (Length: 230)
Name: NF8132_low_42
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 44509374 - 44509600
Alignment:
| Q |
1 |
ccaaaatcaaatccatacacagaacaatcgttaactccaggagcaacaatccgtgttctgaaagaaccaaatccaagaaaccgaatcaacgacaagtaca |
100 |
Q |
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| T |
44509374 |
ccaaaatcaaatccatacacagaacaatcgttaactccaggagcaacaatccgtgttctgaaagaatcaaatccaagaaaccgaatcaacgacaagtaca |
44509473 |
T |
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| Q |
101 |
tactcggtcgtgaacttggccgtggagaattcggtataacatatctttgcacagacaaggaaacaaaacaagagctggcttgtaaatcaatttcgaagcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44509474 |
tactcggtcgtgaacttggccgtggagaattcggtataacatatctttgcacagacaaggaaacaaaacaagagctggcttgtaaatcaatttcgaagcg |
44509573 |
T |
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| Q |
201 |
gaaattaagaactgcggtagacgttga |
227 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
44509574 |
gaaattaagaactgcggttgacgttga |
44509600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 36384541 - 36384477
Alignment:
| Q |
102 |
actcggtcgtgaacttggccgtggagaattcggtataacatatctttgcacagacaaggaaacaa |
166 |
Q |
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| T |
36384541 |
actcggtcgtgaactcggtagaggtgaattcggtgtaacgtatctttgcacagacaaagaaacaa |
36384477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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