View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_5 (Length: 675)
Name: NF8132_low_5
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 6 - 657
Target Start/End: Original strand, 48799412 - 48800059
Alignment:
| Q |
6 |
cagagaactgattaaattaggctggttgtgtttgatgtaaattctgtagtttcaaatggagtttcatttcttcaagcaacattttatcacaattttcttg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48799412 |
cagagaactgattaaattaggctggttgtgtttgatgtaaattctgtagtttcaaatggagtttcattttttcaagcaacattttatcacaattttcttg |
48799511 |
T |
|
| Q |
106 |
taatattattcttggtgaagagaatgaattggcatcattaatcatgttaaattttttggaagccttaattggatgaatccaagtcaatgtttattttttg |
205 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799512 |
taatattattcttggtgaagagaat----tggcatcattaatcatgttaaaatttttggaagccttaattggatgaatccaagtcaatgtttattttttg |
48799607 |
T |
|
| Q |
206 |
caagatacgtgtaaatacttataagatatgcaatcaaagaacctttctctctctaaactaaaacctgtgccctctctctaaaacagatcgcggctccttc |
305 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48799608 |
caagatacatgtaaatacttataagatatgcaatcaaagaacctttcgctctctaaactaaaacctgtgccctctctctaaaacagatcgcggttccttc |
48799707 |
T |
|
| Q |
306 |
tccttcaaatccaacaacactttctcaagatgtagaccatatgacggtggtgcgatgaggcgcggcctccgcaccacctcagctccggcgacgtgtttct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48799708 |
tccttcaaatccaacaacactttctcaagatgtagaccatatgacggtggtgcgatgaggcgcggcctccacaccacctcagctccggcgacgtgtttct |
48799807 |
T |
|
| Q |
406 |
cctgctgctccaccaacgtccttcatcctttcccggcggttgctctatagatcaactttcttgccgacgtcagatccggtgtgtcttttcggatctgttc |
505 |
Q |
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| T |
48799808 |
cctgctgctccaccgacgtccttcatccttttccggcggttgctttatagatcaactttcttgccgacgtcagatccggtgtgtcttttcggatctgttc |
48799907 |
T |
|
| Q |
506 |
attggttttggtggttgtgtcttctcggatctgttcttccggcttgatggggtgggtggtggtgccgccgtcgctggtggcgttttgacaggtttagcag |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799908 |
attggttttggtggttgtgtcttctcggatctgttcttccggcttgctggggtgggtggtggtgccgccgtcgctggtggcgttttgacaggtttagcag |
48800007 |
T |
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| Q |
606 |
cacatctcacggtggtgcggtttggttcgtggtggcttccgggaggtttttt |
657 |
Q |
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| T |
48800008 |
cacatctcacggtggagcggtttggttcgtggtggcttccgggaggtttttt |
48800059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 38148684 - 38148746
Alignment:
| Q |
334 |
gatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgcaccacctcagctccggcg |
395 |
Q |
| |
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| T |
38148684 |
gatgtagatccaaatggcggtggtgcgatgaggtgcggcctccgcatcacctcacctccggcg |
38148746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 13994500 - 13994549
Alignment:
| Q |
330 |
tcaagatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgca |
378 |
Q |
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| T |
13994500 |
tcaagatgtagatccttatgacggtggtgcgatgaggcacggcctccgca |
13994549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 10551040 - 10551080
Alignment:
| Q |
346 |
atgacggtggtgcgatgaggcgcggcctccgcaccacctca |
386 |
Q |
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| T |
10551040 |
atgacggtgatgcgatgaggcgcggcttccgcatcacctca |
10551080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 36594303 - 36594250
Alignment:
| Q |
334 |
gatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgcaccacctca |
386 |
Q |
| |
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|||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| |
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| T |
36594303 |
gatgtagatccaaatgatggtggtgcgatgaggcgcggcctccgcaacacctca |
36594250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 1802122 - 1802162
Alignment:
| Q |
34 |
tgtttgatgtaaattctgtagtttcaaatggagtttcattt |
74 |
Q |
| |
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| T |
1802122 |
tgtttgttgtaaattctgtggtttcaaatggggtttcattt |
1802162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 5888393 - 5888437
Alignment:
| Q |
351 |
ggtggtgcgatgaggcgcggcctccgcaccacctcagctccggcg |
395 |
Q |
| |
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||||| |||| ||||||||||||||||| ||||||| |||||||| |
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| T |
5888393 |
ggtggggcgacgaggcgcggcctccgcatcacctcacctccggcg |
5888437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 51056364 - 51056416
Alignment:
| Q |
342 |
ccatatgacggtggtgcgatgaggcgcggcctccgcaccacctcagctccggc |
394 |
Q |
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|||||| ||||||||| ||||||||||||||| ||| ||||||| ||||||| |
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| T |
51056364 |
ccatattacggtggtgtgatgaggcgcggcctatgcatcacctcacctccggc |
51056416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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