View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_7 (Length: 602)
Name: NF8132_low_7
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_7 |
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| [»] scaffold0025 (3 HSPs) |
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Alignment Details
Target: scaffold0025 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 67377 - 67093
Alignment:
| Q |
1 |
ttcaataatatttgctatatgtctttgcttgctcacaacactaacaattttttggtggattttacctaatcaaaa-tttcaaaaccttagaagatgtgga |
99 |
Q |
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| T |
67377 |
ttcaataatatttgctatatgtctttgcttgctcacaacactaacaattttttggtggattttacctaatcaaaaatttcaaaaccttagaagatgtgga |
67278 |
T |
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| Q |
100 |
tttgatggaccaaccccaagttttccacttggaaacatcaaagagatgaaaaggaataaaagccataaatcttctttttcttcttcatgtgagtccatgg |
199 |
Q |
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| T |
67277 |
tttgatgggccaaccccaagttttccacttggaaacatcaaagagatgaaaaggaataaaagccttaaatcttctttttcttcttcatgtgagtccatgg |
67178 |
T |
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| Q |
200 |
ccttagatattacccatgacatccactctaccatttctccttattattcttcttggcaaaaatcttacggtaagctaataatatc |
284 |
Q |
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| T |
67177 |
ccttagatattacccatgacatccactctaccatttctccttattattcttcttggcaaaaatcttacggtaagctaataatatc |
67093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 352 - 453
Target Start/End: Complemental strand, 67025 - 66925
Alignment:
| Q |
352 |
cttgacaaatcttagtgatgtgaattgtggatagnnnnnnnngaattatattttgttgccattttcaaaacataaatctcattttacaagccatgattta |
451 |
Q |
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| T |
67025 |
cttgacaaatcttagtgatctggattgtggatagttttttt-gaattatattttgttgccattttcaaaacacaaatctcattttacaagccatgattta |
66927 |
T |
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| Q |
452 |
gg |
453 |
Q |
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|| |
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| T |
66926 |
gg |
66925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 563
Target Start/End: Complemental strand, 66854 - 66815
Alignment:
| Q |
524 |
tgaagctatttgtgtttgttaagtataaaaaaatcacttt |
563 |
Q |
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| T |
66854 |
tgaagctatttgtgtttgttaagtataaaaaaatcacttt |
66815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 45422573 - 45422528
Alignment:
| Q |
106 |
ggaccaaccccaagttttccacttggaaacatcaaagagatgaaaa |
151 |
Q |
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| T |
45422573 |
ggaccaaccccaaggtttccacttggaaacattgaagagatgaaaa |
45422528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 45413233 - 45413187
Alignment:
| Q |
106 |
ggaccaaccccaagttttccacttggaaacatcaaagagatgaaaag |
152 |
Q |
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| T |
45413233 |
ggaccaactccaagttttccatttggaaacattgaagagatgaaaag |
45413187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 26837425 - 26837380
Alignment:
| Q |
106 |
ggaccaaccccaagttttccacttggaaacatcaaagagatgaaaa |
151 |
Q |
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| T |
26837425 |
ggaccaaccccaaggtttccacttggaaacattgatgagatgaaaa |
26837380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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