View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8132_low_9 (Length: 594)
Name: NF8132_low_9
Description: NF8132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8132_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 11 - 594
Target Start/End: Original strand, 42205191 - 42205766
Alignment:
| Q |
11 |
cagagaggtaatgttagtttattcattcacagataatgaatggtggtgtagtgcnnnnnnnn-ttgcaagccagcaacctaagctagctaaaatctaaat |
109 |
Q |
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| T |
42205191 |
cagagaggtaatgttagtttattcattcacagataataaatggtg---tagtgcaaaaaaaaattgcaagccagcaacctaagctagctaaaatctaaat |
42205287 |
T |
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| Q |
110 |
ctctctacggactttagcattgtg-------caattatgttgatggtaaattgtannnnnnnnnnnnnnnnnnnnnnnaaatgtgtgtaagttgtagaag |
202 |
Q |
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| T |
42205288 |
ctctctacagaatttagcattgtgtgttgtgcaattatgttgatggtaaattgtattttttatttttgtgtattttttaaatgtgtgtaagttgtagaag |
42205387 |
T |
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| Q |
203 |
tagaagatttaaagtaaatgacagatagagataaatacaaacggtgccataaacgattatatattttgatattcaagtaacgaagatgcatgcattttcg |
302 |
Q |
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| T |
42205388 |
tagaagatttaaagtaaatgacagatagagataaatacaaacggtgtcataaacgattttatattttgatattcaagtaacgaagatgcatgcattttcg |
42205487 |
T |
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| Q |
303 |
gcgtcacaatcaacatgctagtggtaaagtgcacatctatactacggcaaaa------ataaattatttccatttgctatgtggcagttccctcnnnnnn |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
42205488 |
gcgtcacaatcaacatgctagtggtaaagtgcacatctatactacggcaaaaataaatataaattatttccatttgctatgtagcagttccctc------ |
42205581 |
T |
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| Q |
397 |
nnnnnnnnnnnatgactttatcatccggttgaaaaccaaggaactccagtcgcttgtaaggtaaatttacaggccatttggtccattctcttgtaatttc |
496 |
Q |
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| T |
42205582 |
ctgctactgctatgactttatcatccggttgaaaaccaaggaactccagtcgcttgtaaggtaaatttacaggccatttgatccattctcttgtaatttc |
42205681 |
T |
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| Q |
497 |
tttttctaataactttttgtataaatgcatttcaccttctcaatttataaccataatttatgaaattaagcaatattattctccaattcatcactagt |
594 |
Q |
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| T |
42205682 |
tttttctaataactttttgtagaaatgcatttcaccttctc-------------aatttatgaaattaagcaatattattctccaattcatcactagt |
42205766 |
T |
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