View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8133_high_4 (Length: 313)
Name: NF8133_high_4
Description: NF8133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8133_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 32617481 - 32617775
Alignment:
| Q |
2 |
tctaactaacaggacctgcatcatttgttttgtgcaactaaatttgtgctttacttgcactataactctattaactttcaaggttgttgcattattctag |
101 |
Q |
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| T |
32617481 |
tctaactaacaggacatgcatcatttgttttgtgcaactaaatttgtgctttacttgcactataactctattaactttcaaggttgttgcattattctag |
32617580 |
T |
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| Q |
102 |
aatatcaatactgggtgtaaggctgatgtggcttctgtgacattaattatgaggaatctgaaatagtcttcattcatatctcaattagaaatgtgaagaa |
201 |
Q |
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|||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32617581 |
aatatcaagattgggtgtaaggctgatgtggctcctgtgacattagttatgaggaatccgaaatagccttcattcatatctcaattagaaatgtgaagaa |
32617680 |
T |
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| Q |
202 |
aagaccaacaacacccaatttgaatatgaaaatgtataaacttaacaaaaagaagatagaaaatataagagggaaaaaattaacacaaatcatgt |
296 |
Q |
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| T |
32617681 |
aagaccaacatcactcaatttgaatgtgaaaatgtataaacttaacaaaaagaagatagaaaatataagtgggaaaaaattaacacaaatcatgt |
32617775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 296
Target Start/End: Complemental strand, 14605437 - 14605142
Alignment:
| Q |
2 |
tctaactaacaggacctgcatcatttgttttgtgcaactaaatttgtgctttacttgcactataactctattaactttcaaggttgttgcattattctag |
101 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14605437 |
tctaactaacaggacatgcatcatttgttttgtgcaactaaatttgtgttttacttgcactataactctatta-ctttcaaggttgttgcattattctag |
14605339 |
T |
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| Q |
102 |
aatatcaatactgggtgtaaggctgatgtggcttctgtgacatt--aattatgaggaatctgaaatagtcttcattcatatctcaattagaaatgtgaag |
199 |
Q |
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|||||||| |||||||||| |||||||||||| || ||||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
14605338 |
aatatcaaggctgggtgtaaagctgatgtggctcctctgacattttagttatgaggaatccgaaatagccttcattcatatctcaattagaaatgtgaag |
14605239 |
T |
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| Q |
200 |
aaaagaccaacaacacccaatttgaatatgaaaatgtataaacttaacaaaaagaagatagaaaatataagagggaaaaaattaacacaaatcatgt |
296 |
Q |
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|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14605238 |
aaaaaaccaacaacactcaatttgaatgggaaaatgtataaacttaacaaaaagaagatagaaaatataagagggaaaaaattaacacaaatcatgt |
14605142 |
T |
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