View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8133_high_6 (Length: 247)
Name: NF8133_high_6
Description: NF8133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8133_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 52771950 - 52772172
Alignment:
| Q |
4 |
aatccaaccacctgttgctgctccaactattgcaccagctattgccatgctgactattgtttcctgcagaatgttactttctctaacggattcaaaatca |
103 |
Q |
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| T |
52771950 |
aatccaaccacctattgctgctccaactattgcaccagctattgccatgctgactattgtttcctgcagaatgttactttctctaacggattcaaaatca |
52772049 |
T |
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| Q |
104 |
tcttttatatatagaagagctcctgatatcacacctgcatgcatccatgtgccaatttttatttaattattttcacatcaaactattggtcttccagtag |
203 |
Q |
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| T |
52772050 |
tcttttatatatagaagagctcctgatatcacacctgcatgcatccatgtgccaatttttatttaattattttcacatcaaactattggtcttccagtag |
52772149 |
T |
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| Q |
204 |
aggattactgtcattcaccgtta |
226 |
Q |
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| T |
52772150 |
agcattactgtcattcaccgtta |
52772172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 52769012 - 52769076
Alignment:
| Q |
5 |
atccaaccacctgttgctgctccaactattgcaccagctattgccatgctgactattgtttcctg |
69 |
Q |
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| T |
52769012 |
atccaaccacctactgctgctccaacaattgcaccagccactgccatgctgacaattgtttcctg |
52769076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 38013972 - 38014039
Alignment:
| Q |
4 |
aatccaaccacctgttgctgctccaactattgcaccagctattgccatgctgactattgtttcctgca |
71 |
Q |
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| T |
38013972 |
aatccagccacctgttgctgctccaataattgcaccaaccaatgccatgcttacaatagtttcctgca |
38014039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 38014144 - 38014192
Alignment:
| Q |
95 |
tcaaaatcatcttttatatatagaagagctcctgatatcacacctgcat |
143 |
Q |
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| T |
38014144 |
tcaaaatcatctttaatatatagaagagcaccagaaataacacctgcat |
38014192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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