View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8133_low_2 (Length: 523)
Name: NF8133_low_2
Description: NF8133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8133_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 49916235 - 49916733
Alignment:
| Q |
18 |
catttcacgtttcctgtggctataggatttgcaggtggtgtgattccataactcaaggaatataaataacttgagttatttttcttcatcgaatatcaag |
117 |
Q |
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| T |
49916235 |
catttcacgtttcctgtggctataggatttgcaggtggtgtgattccataactcaaggaatataaataacttgagttatttttcttcatcgaatatcaag |
49916334 |
T |
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| Q |
118 |
gtcttgtat--------ttcctttactaagctaaaattttcattgcatatatgaacttagaactatatatatgttgagtgtgttaatttctaaaacaata |
209 |
Q |
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| T |
49916335 |
gtcttgtatatcattatttcctttactaagctaaaattttcattgcatatatgaacttagaactatatatatgttgagtgtgttaatttctaaaacaata |
49916434 |
T |
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| Q |
210 |
attggcatgcagttatcatggttcatttcccatcttttgtcaacggattggcaagaactatgtcgatcaagaaagagaagaattttcgaaaggatgatgc |
309 |
Q |
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| T |
49916435 |
attggcatgcagttatcatggttcatttcccatcttttgtcaacggattggcaagaactatgtcgatcaagaaagagaagaattttcgaaaggatgatgc |
49916534 |
T |
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| Q |
310 |
aaggaaagctgtggaagaattggcaaaggaagcaagaaagaatgaattgttattgagttcctctggagttgttaaggccaacaaggataatagttttgtt |
409 |
Q |
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| T |
49916535 |
aaggaaagctgtggaagaattggcaaaggaagcaagaaagaatgaattgttattgagttcctctggagttgttaaggccaacaaggataatagttttgtt |
49916634 |
T |
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| Q |
410 |
tctgtttttacacatagaggccaaaaaggagtcaaccaagatcgtcttattgtttgggaggtatgcaatcaggaaaaaatttatatactgtgttgtgtt |
508 |
Q |
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| T |
49916635 |
tctgtttttacacatagaggccaaaaaggagtcaaccaagatcgtcttattgtttgggaggtatgcaatctggaaaaaatttatatactgtgttgtgtt |
49916733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 381
Target Start/End: Complemental strand, 13736702 - 13736623
Alignment:
| Q |
302 |
gatgatgcaaggaaagctgtggaagaattggcaaaggaagcaagaaagaatgaattgttattgagttcctctggagttgt |
381 |
Q |
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| T |
13736702 |
gatgatgcaaggaaagttgtggaagcaatggcaaaggaagcaaagaagaatgaaatgttgttgagttcatctggaattgt |
13736623 |
T |
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