View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8133_low_5 (Length: 282)
Name: NF8133_low_5
Description: NF8133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8133_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 52771937 - 52771665
Alignment:
| Q |
5 |
ggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcggacgcc |
104 |
Q |
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| T |
52771937 |
ggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcggacgcc |
52771838 |
T |
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| Q |
105 |
ttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttcattagtcagtactaa |
204 |
Q |
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| T |
52771837 |
ttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttcattagtcagtactaa |
52771738 |
T |
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| Q |
205 |
ttccctcatgatcaccagtggacaactcctttcctacatagttaacctcgcctttacgcgtgtctctgctact |
277 |
Q |
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| T |
52771737 |
ttccctcatgatcaccagtggacaactcctttcctacatagttaacctcgcctttacgcgtgtccctggtact |
52771665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 52769002 - 52768909
Alignment:
| Q |
1 |
ttatggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcata |
94 |
Q |
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| T |
52769002 |
ttatggaagaaagaaggcaaccatcattgcagatgttatctttattctcggagcaattgtcatggctgctgcgccagatccttatattctcata |
52768909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 390110 - 390337
Alignment:
| Q |
1 |
ttatggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcgga |
100 |
Q |
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| T |
390110 |
ttatggaagaaagaaggccacactcttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcagga |
390209 |
T |
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| Q |
101 |
cgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttcattagtcagta |
200 |
Q |
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|| ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||||||||| |||| |||| || ||||||||||| ||||||||||| | |
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| T |
390210 |
cgtcttctcgttggtttgggtgttggcatagcttctgttactgctcctgtctacattgcagaagtcgcaccctctgaaatcagaggctcattagtcagca |
390309 |
T |
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| Q |
201 |
ctaattccctcatgatcaccagtggaca |
228 |
Q |
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| T |
390310 |
ctaatgtcctcatgatcaccggtggaca |
390337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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