View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8133_low_8 (Length: 243)
Name: NF8133_low_8
Description: NF8133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8133_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 40820850 - 40820640
Alignment:
| Q |
17 |
agaaagaaatgaaagtgacatgacatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcg |
116 |
Q |
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| T |
40820850 |
agaaagaaatgaaagtgacatgacatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttattgagctcg |
40820751 |
T |
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| Q |
117 |
ccaatatgtagctgttttcgaggatttgtacccagaaac--agaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagt |
214 |
Q |
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| T |
40820750 |
ccaatatgtagctgttttagaggatttgtacccagaaacatagaagaatggagtatacataattggacgggtcggtgtgttaggaggacacctttggagt |
40820651 |
T |
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| Q |
215 |
gtggaaggatc |
225 |
Q |
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||| ||||||| |
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| T |
40820650 |
gtgaaaggatc |
40820640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 20293011 - 20293198
Alignment:
| Q |
37 |
tgacatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcg |
136 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||| | ||||||| ||||||||||||||||| | |
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| T |
20293011 |
tgacatggacaacccgagaatcagagtgtgatgtttatggtatatgtggggcctttgcaagctgtagttcattgagctcaccaatatgtagctgtttgag |
20293110 |
T |
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| Q |
137 |
aggatttgtacccagaaac--agaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaagg |
222 |
Q |
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| T |
20293111 |
aggatttgtacccagaaacatagaagaatggagtaaacataattggaccggtgggtgtgttaggaggacacctttggagtgtgaaagg |
20293198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 20169730 - 20169547
Alignment:
| Q |
41 |
atggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgagga |
140 |
Q |
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||||||||| || |||||| ||||||||||||| | |||||| ||||||||||| |||| || | ||||||| |||| |||||||||||| |||| |
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| T |
20169730 |
atggacaagtcgggaatcaaagtgtgatgtttacgacttatgtggggcatttgcaagttgtaattcattgagctcaccaacatgtagctgtttgagaggg |
20169631 |
T |
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| Q |
141 |
tttgtacccagaaac--agaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaagg |
222 |
Q |
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|||| |||||||||| |||| |||||| ||||||||| ||||| ||| |||||||| |||||||||||| |||||| |||| |
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| T |
20169630 |
tttgaacccagaaacatagaacaatggaatatacataactggaccggtgggtgtgttcgaaggacacctttgcagtgtgaaagg |
20169547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 20282528 - 20282711
Alignment:
| Q |
39 |
acatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgta--gctgttttcg |
136 |
Q |
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||||||| ||||| ||| ||| ||||||||| |||||||||||||| |||||||||||||||| || | || ||| |||||||||| |||| | | |
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| T |
20282528 |
acatggagaagccaagactcagagtgtgatgcttatggtatatgtggggcatttgcaagctgtaattcattggtctcaccaatatgtatctctgtctgag |
20282627 |
T |
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| Q |
137 |
aggatttgtacccagaaac--agaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtgg |
218 |
Q |
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| T |
20282628 |
aggatttgaacctagaaacatacaagaatggaatatacataactggaccggtgggtgtgttaggagaacccctttgcagtgtgg |
20282711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 20272206 - 20272298
Alignment:
| Q |
39 |
acatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgt |
131 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||||||| | || ||| |||||||| |||||| |
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| T |
20272206 |
acatggacaagccgagattcagagtgtgatgtttatggtatatgtggcgcatttgcaatctgtagttcatcgacctcaccaatatgcagctgt |
20272298 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 20277950 - 20278109
Alignment:
| Q |
39 |
acatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgag |
138 |
Q |
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||||||||||||| ||| | ||||||||||||| |||||||||| ||||||||||||||||||| | || ||| |||||||||| |||| | ||| |
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| T |
20277950 |
acatggacaagccaagacttggagtgtgatgtttacggtatatgtggggcatttgcaagctgtagttcattgttctcaccaatatgtatctgtctgagag |
20278049 |
T |
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| Q |
139 |
gatttgtacccagaaac--agaagaatggagtatacataattggacgggtcggtgtgtta |
196 |
Q |
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| T |
20278050 |
gatttgaacctagaaacatacaagaatggaatggacataactggaccggtgggtgtgtta |
20278109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 20064191 - 20064097
Alignment:
| Q |
39 |
acatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttt |
133 |
Q |
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|||||||| |||||| ||||| |||||||||| ||||||| ||||| ||||||||||||||||||| | ||| | | |||||||| |||||||| |
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| T |
20064191 |
acatggactagccgaaaatcagagtgtgatgtatatggtacatgtggggcatttgcaagctgtagttcattgaacacaccaatatgcagctgttt |
20064097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 20230055 - 20230148
Alignment:
| Q |
40 |
catggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttt |
133 |
Q |
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| T |
20230055 |
catggaaaagccaatactcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgttt |
20230148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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