View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8133_low_9 (Length: 242)

Name: NF8133_low_9
Description: NF8133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8133_low_9
NF8133_low_9
[»] chr3 (6 HSPs)
chr3 (36-232)||(22361131-22361327)
chr3 (36-232)||(22365518-22365714)
chr3 (46-152)||(23397192-23397298)
chr3 (1-40)||(22361077-22361116)
chr3 (1-40)||(22365464-22365503)
chr3 (169-227)||(36028854-36028912)
[»] chr8 (6 HSPs)
chr8 (36-202)||(30045233-30045403)
chr8 (36-202)||(30049636-30049806)
chr8 (38-202)||(7162594-7162758)
chr8 (1-40)||(30045179-30045218)
chr8 (1-40)||(30049582-30049621)
chr8 (1-40)||(7162535-7162574)
[»] chr4 (4 HSPs)
chr4 (36-202)||(3941491-3941661)
chr4 (36-202)||(3945890-3946060)
chr4 (1-40)||(3941437-3941476)
chr4 (1-40)||(3945836-3945875)
[»] chr5 (4 HSPs)
chr5 (36-227)||(200578-200769)
chr5 (36-202)||(196224-196390)
chr5 (4-40)||(196405-196441)
chr5 (4-40)||(200784-200820)
[»] chr2 (2 HSPs)
chr2 (43-202)||(1330688-1330847)
chr2 (1-40)||(1330627-1330666)
[»] chr7 (4 HSPs)
chr7 (36-232)||(39949346-39949540)
chr7 (36-232)||(39953738-39953932)
chr7 (1-40)||(39949555-39949594)
chr7 (1-40)||(39953947-39953986)
[»] scaffold1453 (1 HSPs)
scaffold1453 (95-232)||(1-138)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 22361131 - 22361327
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 135  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22361131 agtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 22361230  T
Q  136 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttccannnnnnnncttctctaatttctgttctctg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||    
T  22361231 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttccatttcttttcttctctaatttctgttttctg 22361327  T

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Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 22365518 - 22365714
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 135  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22365518 agtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcaactaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 22365617  T
Q  136 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttccannnnnnnncttctctaatttctgttctctg 232  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||    
T  22365618 ggatgtatggatgatatgtatcaaatttgcagtatagtaaacattgttattgtccctttctcttccatttcttttcttctctaatttctgttttctg 22365714  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 23397298 - 23397192
Alignment:
Q  46 tctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatgg 145  Q
    |||| ||||||||| |||||||||||| |||||||||| | ||| ||| | |  ||||||||| |||||||| || ||| |||||||||| |||||||||    
T  23397298 tctgtacaagttaaataggtttatgtcgtatgacatcaacaaagtataagttatgtcattactaagtatttgactctaaatatgtaagaaagatgtatgg 23397199  T
Q  146 atggtat 152  Q
    |||||||    
T  23397198 atggtat 23397192  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22361077 - 22361116
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22361077 tgcttatgtgtgtaattattttaacttgttttgttagtaa 22361116  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22365464 - 22365503
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22365464 tgcttatgtgtgtaattattttaacttgttttgttagtaa 22365503  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 36028912 - 36028854
Alignment:
Q  169 atagtaaacattgttattgtccctttctcttccannnnnnnncttctctaatttctgtt 227  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  36028912 atagtaaacattgttattgtccctttctcttccatttcttttcttctctaatttctgtt 36028854  T

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Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 30045233 - 30045403
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 131  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045233 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 30045332  T
Q  132 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045333 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 30045403  T

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Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 30049636 - 30049806
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 131  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049636 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 30049735  T
Q  132 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049736 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 30049806  T

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Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 7162594 - 7162758
Alignment:
Q  38 taagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaagg 137  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7162594 taaggttatctgcacaagttaagcaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaagg 7162693  T
Q  138 atgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 202  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7162694 atgtatggatggtttgtattaaatttgcagcatagtaaacattgttattgtccctttctcttcca 7162758  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30045179 - 30045218
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30045179 tgcttatgtgtgtaattattttaacttgttttgttagtaa 30045218  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30049582 - 30049621
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30049582 tgcttatgtgtgtaattattttaacttgttttgttagtaa 30049621  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7162535 - 7162574
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  7162535 tgcttatgtgtgtaatcattttaacttattttgttagtaa 7162574  T

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Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 3941491 - 3941661
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 131  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941491 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 3941590  T
Q  132 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941591 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 3941661  T

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Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 3945890 - 3946060
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 131  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945890 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 3945989  T
Q  132 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945990 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 3946060  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3941437 - 3941476
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3941437 tgcttatgtgtgtaattattttaacttgttttgttagtaa 3941476  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3945836 - 3945875
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3945836 tgcttatgtgtgtaattattttaacttgttttgttagtaa 3945875  T

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Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 200769 - 200578
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 135  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  200769 agtaaggttatctgcacaagttaagtaggtttacctcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 200670  T
Q  136 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttccannnnnnnncttctctaatttctgtt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  200669 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttccatttcttttcttctctaatttctgtt 200578  T

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Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 196390 - 196224
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 135  Q
    |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  196390 agtaaggttatctgcacgagttaagtaggtttacgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 196291  T
Q  136 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  196290 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtctctttctcttcca 196224  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 196441 - 196405
Alignment:
Q  4 ttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||| |||||||||||||||||||||||    
T  196441 ttatgtgtgtaatcattttaacttgttttgttagtaa 196405  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 200820 - 200784
Alignment:
Q  4 ttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||| |||||||||||||||||||||||    
T  200820 ttatgtgtgtaatcattttaacttgttttgttagtaa 200784  T

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Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 1330688 - 1330847
Alignment:
Q  43 ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgta 142  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |||||||| ||||||||||||||||||||||||    
T  1330688 ttatctgcacaagttaagtaggtttatgtcatatgacatcagcaaagtataggttgagtcattagtaagtatttgactataagtatgtaagaaggatgta 1330787  T
Q  143 tggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 202  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1330788 aggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 1330847  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1330627 - 1330666
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  1330627 tgcttatgtgtgtaatcattttaacttgttttgttagtaa 1330666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 39949540 - 39949346
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 135  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  39949540 agtaaggttatctgca--agttaagtaggtttatgtcatatgacatcagctaaacataggctgagttattactaagtatttggctataagtatgtaagaa 39949443  T
Q  136 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttccannnnnnnncttctctaatttctgttctctg 232  Q
    ||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||    
T  39949442 ggatgtatggatgatatataaaaaatttgcagcatagtaaacattgttattgtccctttctcttccatttcttttcttctctaatttctgttttctg 39949346  T

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Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 39953932 - 39953738
Alignment:
Q  36 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 135  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||    
T  39953932 agtaaggttatctgca--agttaagtaggtttatgtcatatgacatcagctaaacatagactgagttattactaagtatttggctataagtatgtaagaa 39953835  T
Q  136 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttccannnnnnnncttctctaatttctgttctctg 232  Q
    ||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||    
T  39953834 ggatgtatggatgatatataaaaaatttgcagcatagtaaacattgttattgtccctttctcttccatttcttttcttctctaatttctgttttctg 39953738  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39949594 - 39949555
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39949594 tgcttatgtgtgtaattattttaacttgttttgttagtaa 39949555  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39953986 - 39953947
Alignment:
Q  1 tgcttatgtgtgtaattattttaacttgttttgttagtaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39953986 tgcttatgtgtgtaattattttaacttgttttgttagtaa 39953947  T

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Target: scaffold1453 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 1 - 138
Alignment:
Q  95 gctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtcccttt 194  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 gctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtcccttt 100  T
Q  195 ctcttccannnnnnnncttctctaatttctgttctctg 232  Q
    ||||||||        ||||||||||||||||| ||||    
T  101 ctcttccatttcttttcttctctaatttctgttttctg 138  T

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