View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8134_low_2 (Length: 470)
Name: NF8134_low_2
Description: NF8134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8134_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 11019227 - 11019664
Alignment:
| Q |
18 |
atgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaatcgaatcgtggaa |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11019227 |
atgaaggtggctttgaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaatcggaccgtggaa |
11019326 |
T |
|
| Q |
118 |
aggagattaaagagaggattttgaaaatgaaaatatgtgctaaggaagcaagaggaggaggtggatcttctctttttgatttgaaaaagttgggagattc |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11019327 |
aggatattaaagagaggattttgaaaatgaaaataagtgctaaggaggcaagaggaggaggtggatcttctcttgttgatttgaaaaagttgggagattc |
11019426 |
T |
|
| Q |
218 |
atggagagagcatgcttcttggaatagtgtatcaccaaattcccctttccttcttcgttgaaaattagaaataattctttagatggaataaaattcgaaa |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
11019427 |
atggagggagcatgcttcttggaatagtttatcaccaaattcccctttccttcttcgttgaaaattaaaaatagatctttagagggaataaaattcgaaa |
11019526 |
T |
|
| Q |
318 |
tgtgtgtccatgccaat-nnnnnnnttataaatatgtgtattatattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgtt |
416 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11019527 |
agtgtgtccatgctaataaaaaaaattataaatatgtgtattatattgagatgtgaatcaaaattagtagtatcttttttatgtcatgaagaatgatgtt |
11019626 |
T |
|
| Q |
417 |
catgcatcatatgtcgtatcttttttcagaattattat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11019627 |
catgcatcatatgtcgtatcttttttcagaattattat |
11019664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 222 - 452
Target Start/End: Original strand, 11050445 - 11050678
Alignment:
| Q |
222 |
agagagcatgcttcttggaatagtgtatcaccaaattcccctttccttcttcgttgaaaattagaaataattctttagatggaataaaattcgaaatgtg |
321 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||| |
|
|
| T |
11050445 |
agagaggatgcttcttggaatagtttatcatcaaatttcactttccttcttcgttgaaaattaaaaatagatctttagagggaataaaattcgaaaagtg |
11050544 |
T |
|
| Q |
322 |
tgtccatgccaatnnnnnnn-ttataaatatgtgtattatattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatg |
420 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11050545 |
tgtccatgccaataaaaaaaattataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatg |
11050644 |
T |
|
| Q |
421 |
catc--atatgtcgtatcttttttcagaattatt |
452 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |
|
|
| T |
11050645 |
tatcatatatgtcgtatctttttttggaattatt |
11050678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 55 - 262
Target Start/End: Original strand, 11080024 - 11080231
Alignment:
| Q |
55 |
ggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaatc-gaatcgtggaaaggagattaaagagaggattttgaaaatgaaaatat |
153 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||||||||||||||||| ||| | |||||| || ||| ||||| |||||||| ||||||||| |
|
|
| T |
11080024 |
ggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaag-aggttagagagacaattttgaagatgaaaataa |
11080122 |
T |
|
| Q |
154 |
gtgctaaggaagcaagaggaggaggtggatcttctctttttgatttgaaaaagttgggagattcatggagagagcatgcttcttggaatagtgtatcacc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||| || |
|
|
| T |
11080123 |
gtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaaaagttaggagattcttggagggagcatgcttcttggactagtgtatctcc |
11080222 |
T |
|
| Q |
254 |
aaattcccc |
262 |
Q |
| |
|
||||||||| |
|
|
| T |
11080223 |
aaattcccc |
11080231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 55 - 262
Target Start/End: Original strand, 11002883 - 11003090
Alignment:
| Q |
55 |
ggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaatc-gaatcgtggaaaggagattaaagagaggattttgaaaatgaaaatat |
153 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||||||||||||| ||| |||||| |||||| ||||| |||||||| ||||||| | |
|
|
| T |
11002883 |
ggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaagggaaag-agattagagagacaattttgaagatgaaaacaa |
11002981 |
T |
|
| Q |
154 |
gtgctaaggaagcaagaggaggaggtggatcttctctttttgatttgaaaaagttgggagattcatggagagagcatgcttcttggaatagtgtatcacc |
253 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| |||||||||||| ||| |||||||| ||||| ||||||||||||| || |||| |||| || |
|
|
| T |
11002982 |
gtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaaaaggttaggagattcttggagggagcatgcttctttgactagtttatctcc |
11003081 |
T |
|
| Q |
254 |
aaattcccc |
262 |
Q |
| |
|
||||||||| |
|
|
| T |
11003082 |
aaattcccc |
11003090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 11050343 - 11050430
Alignment:
| Q |
18 |
atgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11050343 |
atgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcgcagaattgggtgagagagttaaggagttgatggaat |
11050430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University