View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8134_low_4 (Length: 303)

Name: NF8134_low_4
Description: NF8134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8134_low_4
NF8134_low_4
[»] chr6 (14 HSPs)
chr6 (19-105)||(34396428-34396514)
chr6 (104-175)||(34395419-34395490)
chr6 (217-288)||(34395306-34395377)
chr6 (111-173)||(21060468-21060529)
chr6 (111-173)||(21079785-21079846)
chr6 (111-165)||(19594048-19594102)
chr6 (103-171)||(2980634-2980703)
chr6 (111-172)||(19246248-19246308)
chr6 (111-166)||(31878924-31878979)
chr6 (111-172)||(22564614-22564674)
chr6 (111-164)||(23644390-23644442)
chr6 (111-172)||(24389212-24389272)
chr6 (111-163)||(9507344-9507395)
chr6 (111-175)||(10505118-10505181)
[»] chr1 (8 HSPs)
chr1 (103-175)||(27912026-27912099)
chr1 (107-169)||(20033185-20033247)
chr1 (103-175)||(26581536-26581609)
chr1 (113-172)||(16363597-16363655)
chr1 (104-172)||(24901172-24901241)
chr1 (104-168)||(17016900-17016965)
chr1 (111-172)||(25402500-25402560)
chr1 (111-163)||(14235358-14235409)
[»] chr4 (15 HSPs)
chr4 (103-169)||(19538951-19539017)
chr4 (107-169)||(19667016-19667078)
chr4 (109-165)||(11241067-11241123)
chr4 (103-169)||(25117933-25118001)
chr4 (105-171)||(7613701-7613768)
chr4 (111-165)||(7583764-7583817)
chr4 (111-169)||(17434406-17434463)
chr4 (103-175)||(22217056-22217127)
chr4 (111-166)||(5691728-5691782)
chr4 (125-175)||(17661940-17661990)
chr4 (125-175)||(21166544-21166594)
chr4 (114-167)||(26047214-26047267)
chr4 (114-167)||(26052395-26052448)
chr4 (135-167)||(9739989-9740021)
chr4 (111-163)||(19883586-19883637)
[»] chr7 (15 HSPs)
chr7 (111-175)||(2506871-2506935)
chr7 (111-175)||(24194389-24194453)
chr7 (111-172)||(6018330-6018390)
chr7 (112-166)||(21502827-21502880)
chr7 (111-172)||(1589211-1589271)
chr7 (111-171)||(9767757-9767816)
chr7 (113-172)||(1586165-1586223)
chr7 (111-169)||(5221036-5221093)
chr7 (111-165)||(8977542-8977595)
chr7 (111-172)||(10418529-10418589)
chr7 (146-175)||(13281789-13281818)
chr7 (146-175)||(17974314-17974343)
chr7 (103-175)||(2455306-2455378)
chr7 (111-175)||(5046898-5046961)
chr7 (147-175)||(17981080-17981108)
[»] chr8 (10 HSPs)
chr8 (112-175)||(24851006-24851068)
chr8 (111-172)||(6886640-6886700)
chr8 (103-175)||(18836755-18836828)
chr8 (111-175)||(13833665-13833728)
chr8 (111-171)||(28904033-28904092)
chr8 (111-166)||(24380424-24380478)
chr8 (111-165)||(13313343-13313396)
chr8 (115-169)||(24750803-24750856)
chr8 (111-172)||(4007216-4007276)
chr8 (111-175)||(14077094-14077157)
[»] chr5 (9 HSPs)
chr5 (105-175)||(28280247-28280318)
chr5 (111-166)||(26069221-26069275)
chr5 (103-161)||(20532597-20532655)
chr5 (111-172)||(18832194-18832254)
chr5 (111-172)||(19006913-19006973)
chr5 (109-166)||(26315155-26315211)
chr5 (135-175)||(107722-107762)
chr5 (111-175)||(26253464-26253527)
chr5 (111-163)||(29987928-29987979)
[»] chr3 (10 HSPs)
chr3 (111-166)||(18535742-18535796)
chr3 (103-169)||(3003019-3003088)
chr3 (111-172)||(22246969-22247029)
chr3 (122-169)||(26092888-26092935)
chr3 (104-175)||(7805705-7805777)
chr3 (111-165)||(13906655-13906708)
chr3 (111-165)||(18457183-18457236)
chr3 (111-172)||(17135064-17135124)
chr3 (112-165)||(20431445-20431497)
chr3 (104-164)||(16242266-16242325)
[»] chr2 (6 HSPs)
chr2 (109-167)||(16157154-16157211)
chr2 (111-175)||(8501572-8501635)
chr2 (111-165)||(17350950-17351003)
chr2 (111-164)||(18545244-18545296)
chr2 (109-169)||(18970841-18970900)
chr2 (111-175)||(32141453-32141516)
[»] scaffold0024 (1 HSPs)
scaffold0024 (111-172)||(41311-41371)
[»] scaffold0043 (1 HSPs)
scaffold0043 (111-171)||(88502-88561)
[»] scaffold0451 (1 HSPs)
scaffold0451 (111-172)||(10158-10218)
[»] scaffold0330 (1 HSPs)
scaffold0330 (236-284)||(813-861)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 34396514 - 34396428
Alignment:
Q  19 acaaaatccagttaccacctaaaacagttcacccttgaattaatagctacaacctatcaacccaagactttaatttatgctatttga 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34396514 acaaaatccagttaccacctaaaacagttcacccttgaattaatagctacaacctatcaacccaagactttaatttatgctatttga 34396428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 34395490 - 34395419
Alignment:
Q  104 gactcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34395490 gactcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 34395419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 34395377 - 34395306
Alignment:
Q  217 gtaagatggcatgtcatgaagaacaaaatctatgtttctagcactcatgtgcagcgtgtgtcccttcgtgtg 288  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34395377 gtaagatggcatatcatgaagaacaaaatctatgtttctagcactcatgtgcagcgtgtgtcccttcgtgtg 34395306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 21060529 - 21060468
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttgg 173  Q
    |||||||||| || ||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  21060529 atagaaaacattaaaaatgtcca-aaaatcatatgcaattgatctaatactcctctattttgg 21060468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 21079846 - 21079785
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttgg 173  Q
    |||||||||| | |||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  21079846 atagaaaacattgcaaatgtcca-aaaatcatatgcaattgatctaatactcctctattttgg 21079785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 19594102 - 19594048
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||| |||||| ||||  ||||||||| |||||||||||||||||||||    
T  19594102 atagaaaacattacaaaagtccgtaaaatcataggcaattgttctaatactcctc 19594048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 2980703 - 2980634
Alignment:
Q  103 tgactcaaatagaaaacaatacaaa-tgtcctgaaaatcatatgcaattgttctaatactcctctatttt 171  Q
    ||||||||| |||||||| |||||| | |||  |||| ||||||||||||||||||||||| ||||||||    
T  2980703 tgactcaaaaagaaaacattacaaaatatcccaaaaagcatatgcaattgttctaatactcatctatttt 2980634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 19246248 - 19246308
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||| |||||||||||||  ||||||||| ||||||| |||||||||| |||||||||    
T  19246248 atagaaaataatacaaatgtcc-caaaatcataagcaattgatctaatactcatctattttg 19246308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 31878979 - 31878924
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctct 166  Q
    |||||||||| ||||||||||| ||||||||||  |||||| ||||||| ||||||    
T  31878979 atagaaaacattacaaatgtcccgaaaatcatagacaattgatctaatattcctct 31878924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 22564674 - 22564614
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| ||||||||||| |||| ||| | ||||||| |||||||||||||| |||||    
T  22564674 atagaaaacattacaaatgtcccgaaa-tcacaggcaattgctctaatactcctctgttttg 22564614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 23644442 - 23644390
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcct 164  Q
    |||||||||| ||||||||||| |||| ||||| ||||||| ||||||||||||    
T  23644442 atagaaaacattacaaatgtcccgaaa-tcataggcaattgatctaatactcct 23644390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 24389272 - 24389212
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    ||||||||||||| |||||||| |||| ||||| ||||||  |||||||||||||| |||||    
T  24389272 atagaaaacaatataaatgtcccgaaa-tcataggcaattaatctaatactcctctgttttg 24389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 9507395 - 9507344
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcc 163  Q
    |||||||| | ||||||||||| |||| ||||| |||||||||||||||||||    
T  9507395 atagaaaatattacaaatgtcccgaaa-tcataagcaattgttctaatactcc 9507344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 10505118 - 10505181
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||| |||| ||||||||||| ||||| |||| | |||||||||||||| ||| |||||    
T  10505118 atagaaaacattacatatgtcctgaaa-tcataagcaactattctaatactcctcaattctggat 10505181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 27912026 - 27912099
Alignment:
Q  103 tgactcaaatagaaaacaatacaaa-tgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||||| ||||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  27912026 tgactcaaatagcaaacattacaaaatgtcctgaaaatcatagacaattgttctaatactcctctattttggat 27912099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 20033247 - 20033185
Alignment:
Q  107 tcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||| ||||||||| ||||||||| | ||||| |||| | |||||||||||||||||||||||    
T  20033247 tcaattagaaaacattacaaatgttccgaaaaccataggtaattgttctaatactcctctatt 20033185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 26581536 - 26581609
Alignment:
Q  103 tgactcaa-atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||| |||||||||| ||||||||||| ||||| |||| |||||  |||||||||||||| ||| |||||    
T  26581536 tgactcaatatagaaaacattacaaatgtcccgaaaaccataggcaataattctaatactcctccattatggat 26581609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 16363597 - 16363655
Alignment:
Q  113 agaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||| ||||||||||| | |||| ||||| ||||||| ||||||||||||||||||||    
T  16363597 agaaaagaatacaaatgttccgaaa-tcataggcaattgatctaatactcctctattttg 16363655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 24901172 - 24901241
Alignment:
Q  104 gactcaaata--gaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    ||||||||||  ||||||||||||||||||||| |||| ||| ||||||| ||||||||| |||| |||||    
T  24901172 gactcaaatattgaaaacaatacaaatgtcctg-aaatgataagcaattgatctaatacttctctgttttg 24901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 17016965 - 17016900
Alignment:
Q  104 gactcaaatagaaaacaatac-aaatgtcctgaaaatcatatgcaattgttctaatactcctctat 168  Q
    ||||||||||||||||||||| ||||  ||| |||  |||| |||| |||||||||||||||||||    
T  17016965 gactcaaatagaaaacaatacaaaataccctaaaagccataggcaagtgttctaatactcctctat 17016900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 25402560 - 25402500
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| |||||| ||||||||| |||||  |||| |||||||||||||||| |||||    
T  25402560 atagaaaacattacaaaagtcctgaaa-tcataaacaatcgttctaatactcctcttttttg 25402500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 14235409 - 14235358
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcc 163  Q
    |||||||||| |||||||||||  ||||||||| ||||||| |||||||||||    
T  14235409 atagaaaacattacaaatgtccc-aaaatcataagcaattggtctaatactcc 14235358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 19539017 - 19538951
Alignment:
Q  103 tgactcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||||||||||||||||| ||||||||||    |||||||| |||||||||||||||||||||||||    
T  19539017 tgactcaaatagaaaacattacaaatgtctcagaaatcataggcaattgttctaatactcctctatt 19538951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 19667078 - 19667016
Alignment:
Q  107 tcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||||||||||||| |||||||||||   |||||||| |||||||||||||||||||||||||    
T  19667078 tcaaatagaaaacattacaaatgtcccagaaatcataggcaattgttctaatactcctctatt 19667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 11241067 - 11241123
Alignment:
Q  109 aaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||||| |||||||||||  |||||||||  ||||||||||||||||||||    
T  11241067 aaatagaaaacattacaaatgtcccaaaaatcataaacaattgttctaatactcctc 11241123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 25118001 - 25117933
Alignment:
Q  103 tgactcaa-atagaaaacaat-acaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||||||| |||||||| ||| ||||||||||||||||||||| | ||||||||||||| |||||||||    
T  25118001 tgactcaatatagaaaaaaattacaaatgtcctgaaaatcataggtaattgttctaatagtcctctatt 25117933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 7613701 - 7613768
Alignment:
Q  105 actcaaatagaaaacaatacaaa-tgtcctgaaaatcatatgcaattgttctaatactcctctatttt 171  Q
    |||||||||||||||| |||||| | ||  ||| | ||||||||||||||||||||||||||||||||    
T  7613701 actcaaatagaaaacattacaaaatatctcgaagaccatatgcaattgttctaatactcctctatttt 7613768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 7583764 - 7583817
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||    
T  7583764 atagaaaacattacaaaagtcctgaaa-tcataggcaattgttctaatactcctc 7583817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 17434406 - 17434463
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||||||||| ||||||||||| |||| ||||| ||||||| |||||||||||||||||    
T  17434406 atagaaaacattacaaatgtcccgaaa-tcataagcaattgatctaatactcctctatt 17434463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 22217127 - 22217056
Alignment:
Q  103 tgactcaaatagaaaacaatacaaa-tgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| ||||| ||||||||||    
T  22217127 tgactcaaatagaaaaca-tacaaaatgtcatgaaa-tcataggcaattgttctaatgctcctttattttggat 22217056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 5691728 - 5691782
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctct 166  Q
    |||||||||||||||||||| ||| ||||||||  |||||| ||||||||||||||    
T  5691728 atagaaaacaatacaaatgttctg-aaatcatagacaattgatctaatactcctct 5691782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 17661940 - 17661990
Alignment:
Q  125 aaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||  |||||||||| || ||||||||||||||||| ||||||||||    
T  17661940 aaatgtcgagaaaatcataggcgattgttctaatactcctttattttggat 17661990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 21166594 - 21166544
Alignment:
Q  125 aaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    ||||||| || ||||||||||||||| |||||| ||||||||| |||||||    
T  21166594 aaatgtcatgtaaatcatatgcaatttttctaaaactcctctaatttggat 21166544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 26047267 - 26047214
Alignment:
Q  114 gaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctcta 167  Q
    ||||||| ||||||| |||  ||||||||| ||||||||||||| |||||||||    
T  26047267 gaaaacattacaaatatcccaaaaatcataggcaattgttctaaaactcctcta 26047214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 26052448 - 26052395
Alignment:
Q  114 gaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctcta 167  Q
    ||||||| ||||||| |||  ||||||||| ||||||||||||| |||||||||    
T  26052448 gaaaacattacaaatatcccaaaaatcataggcaattgttctaaaactcctcta 26052395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 9740021 - 9739989
Alignment:
Q  135 aaaatcatatgcaattgttctaatactcctcta 167  Q
    ||||||||||||||||||||||| |||||||||    
T  9740021 aaaatcatatgcaattgttctaaaactcctcta 9739989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 19883637 - 19883586
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcc 163  Q
    |||||||||| ||||||||||| |||| |||||  ||||||||||||||||||    
T  19883637 atagaaaacattacaaatgtcccgaaa-tcatagacaattgttctaatactcc 19883586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 2506935 - 2506871
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||| ||||||||||  |||||||||| ||||||||||||||||||||| ||| |||||    
T  2506935 atagaaaacattacaaatgtctcgaaaatcataagcaattgttctaatactcctcgattctggat 2506871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 24194389 - 24194453
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||| || ||||||||| |||| || ||||||||||||||||||||||||||| |||||    
T  24194389 atagaaaacattataaatgtcctaaaaaccacatgcaattgttctaatactcctctattctggat 24194453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 6018330 - 6018390
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    ||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||| |||||    
T  6018330 atagaaaacaatacaaatgtcct-aaaatcataggcaattaatctaatactcctctgttttg 6018390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 21502827 - 21502880
Alignment:
Q  112 tagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctct 166  Q
    ||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  21502827 tagaaaacattacaaatgtcccgaaa-tcataggcaattgttctaatactcctct 21502880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 1589211 - 1589271
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    ||||| ||||||||||||||| ||||| ||||||||||||  ||||||||||||||| ||||    
T  1589211 atagacaacaatacaaatgtcttgaaa-tcatatgcaattaatctaatactcctctactttg 1589271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 9767757 - 9767816
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatttt 171  Q
    ||||||||||||| |||||||  |||| ||||| ||||||| |||||||||||||||||||    
T  9767757 atagaaaacaatataaatgtctcgaaa-tcataggcaattgatctaatactcctctatttt 9767816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 1586165 - 1586223
Alignment:
Q  113 agaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||| ||||||||||||| ||||||||  |||||| |||||| |||||||||||||    
T  1586165 agaaaacattacaaatgtcctg-aaatcatagacaattgctctaatgctcctctattttg 1586223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 5221093 - 5221036
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||||||||| ||||||||| | |||| ||||| |||||||||||| ||||||||||||    
T  5221093 atagaaaacattacaaatgtaccgaaa-tcataagcaattgttctagtactcctctatt 5221036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 8977595 - 8977542
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||| |||||| ||||||||| ||||| ||| |||||||||||||||||    
T  8977595 atagaaaacattacaaaagtcctgaaa-tcataggcagttgttctaatactcctc 8977542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 10418529 - 10418589
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| ||||||||| | |||| ||||| ||||||| |||||||||||||| |||||    
T  10418529 atagaaaacattacaaatgttccgaaa-tcataggcaattgctctaatactcctctgttttg 10418589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 13281818 - 13281789
Alignment:
Q  146 caattgttctaatactcctctattttggat 175  Q
    ||||||||||||||||||||||||||||||    
T  13281818 caattgttctaatactcctctattttggat 13281789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 17974314 - 17974343
Alignment:
Q  146 caattgttctaatactcctctattttggat 175  Q
    ||||||||||||||||||||||||||||||    
T  17974314 caattgttctaatactcctctattttggat 17974343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 2455306 - 2455378
Alignment:
Q  103 tgactcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||||||||||| |||||||||||  ||||  ||  | ||||||| |||||||| | ||||||||||    
T  2455306 tgactcaaatagaaaacattacaaatgtcccaaaaactatgggaaattgttataatactcatttattttggat 2455378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 5046961 - 5046898
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||| ||||||||||| | || ||||| |||||| |||||||| ||||||||| |||||    
T  5046961 atagaaaacattacaaatgtcccg-aattcataagcaattattctaataatcctctattctggat 5046898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 17981080 - 17981108
Alignment:
Q  147 aattgttctaatactcctctattttggat 175  Q
    |||||||||||||||||||||||||||||    
T  17981080 aattgttctaatactcctctattttggat 17981108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 24851068 - 24851006
Alignment:
Q  112 tagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    ||||||||| ||||||||| |||||| ||||| ||||||||| ||||||||||||||| |||||    
T  24851068 tagaaaacattacaaatgttctgaaa-tcataagcaattgttataatactcctctattctggat 24851006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 6886640 - 6886700
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| ||||||||||| |||| ||||| ||||||  ||||||||||||||||||||    
T  6886640 atagaaaacattacaaatgtcccgaaa-tcataggcaattactctaatactcctctattttg 6886700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 18836755 - 18836828
Alignment:
Q  103 tgactcaa-atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||| |||| ||||| ||||||||||||||||| ||||  ||| ||||||||||||||| |||| |||||    
T  18836755 tgactcaatatagtaaacattacaaatgtcctgaaaaccataaacaaatgttctaatactcctatattatggat 18836828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 13833728 - 13833665
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||| ||||||||||| |||| ||||| ||||||| ||||||||||| ||||| |||||    
T  13833728 atagaaaacattacaaatgtcccgaaa-tcataagcaattgctctaatactccactattatggat 13833665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 28904092 - 28904033
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatttt 171  Q
    |||||||||| ||||||||||| |||| ||||| |||||  ||||||||||||||||||||    
T  28904092 atagaaaacattacaaatgtcccgaaa-tcataagcaatgtttctaatactcctctatttt 28904033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 24380478 - 24380424
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctct 166  Q
    ||||||||||||| |||||| | |||| ||||| ||||||||||||||||||||||    
T  24380478 atagaaaacaatagaaatgttccgaaa-tcataggcaattgttctaatactcctct 24380424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 13313396 - 13313343
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||| |||||| |||| |||| ||||| |||||||||||||||||||||    
T  13313396 atagaaaacattacaaaagtcccgaaa-tcataggcaattgttctaatactcctc 13313343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 24750803 - 24750856
Alignment:
Q  115 aaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||    
T  24750803 aaaacattacaagtgtcctgaaa-tcataatcaattgttctaatactcctctatt 24750856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 4007276 - 4007216
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    ||||||||||||||||| ||| | ||||||||   |||||| ||||||||||||||||||||    
T  4007276 atagaaaacaatacaaacgtc-tcaaaatcattgacaattgatctaatactcctctattttg 4007216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 14077094 - 14077157
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||| | |||||||||||  ||||||||| ||||||| |||||||||||||| || |||||    
T  14077094 atagaaaatattacaaatgtccc-aaaatcataagcaattgatctaatactcctcttttctggat 14077157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 28280247 - 28280318
Alignment:
Q  105 actcaaatagaaaacaatacaaa-tgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    ||||||||| |||||| |||||| |||||  |||| ||||  ||||||||||||||||||||||||||||||    
T  28280247 actcaaatataaaacattacaaaatgtcccaaaaaccatagacaattgttctaatactcctctattttggat 28280318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 26069221 - 26069275
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctct 166  Q
    |||||||| | ||||||||| |||||| ||||| ||||||||||||||||||||||    
T  26069221 atagaaaatattacaaatgttctgaaa-tcataagcaattgttctaatactcctct 26069275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 20532655 - 20532597
Alignment:
Q  103 tgactcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatact 161  Q
    |||||||||||||||||  |||||||||||| |||| ||||  |||||||| |||||||    
T  20532655 tgactcaaatagaaaacgttacaaatgtcctaaaaaccatagacaattgttataatact 20532597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 18832194 - 18832254
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| ||||||||||| |||| |||||  |||||| |||||||||||||| |||||    
T  18832194 atagaaaacattacaaatgtcccgaaa-tcatagacaattgctctaatactcctctgttttg 18832254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 19006973 - 19006913
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| |||||| |||| |||| ||||| ||||| ||||||||||||||| ||||||    
T  19006973 atagaaaacattacaaaagtcccgaaa-tcataggcaatcgttctaatactcctccattttg 19006913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 26315155 - 26315211
Alignment:
Q  109 aaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctct 166  Q
    |||||||||||| |||||||||| | ||||||||| ||||  ||||||||||||||||    
T  26315155 aaatagaaaacattacaaatgtc-tcaaaatcataagcaaccgttctaatactcctct 26315211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 107762 - 107722
Alignment:
Q  135 aaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||| || ||||||||||||||||||||||||| |||||    
T  107762 aaaatcgtaagcaattgttctaatactcctctattgtggat 107722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 26253464 - 26253527
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||| | ||||||||| |||||| ||||| ||||||| | ||||||||||||||| |||||    
T  26253464 atagaaaatattacaaatgttctgaaa-tcataagcaattgctttaatactcctctattgtggat 26253527  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 29987928 - 29987979
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcc 163  Q
    |||||||||| |||||| |||| |||| ||||||||||| |||||||||||||    
T  29987928 atagaaaacattacaaaagtcccgaaa-tcatatgcaatcgttctaatactcc 29987979  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 18535742 - 18535796
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctct 166  Q
    |||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||    
T  18535742 atagaaaacaatacaaatgtcccg-aaatcataagcaattgatctaatactcctct 18535796  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 3003019 - 3003088
Alignment:
Q  103 tgactcaaatagaaaacaatacaaa-tgtcctgaaaatcatatgcaattgttctaata--ctcctctatt 169  Q
    |||||||||||||||||| |||||| | |||||||||||||| ||||||| |||||||  ||||||||||    
T  3003019 tgactcaaatagaaaacattacaaaatatcctgaaaatcataagcaattgctctaatatgctcctctatt 3003088  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 22246969 - 22247029
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| |||||||||||  |||||||||  |||||| ||||||||||||||||||||    
T  22246969 atagaaaacattacaaatgtccc-aaaatcatagtcaattgctctaatactcctctattttg 22247029  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 26092888 - 26092935
Alignment:
Q  122 tacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    ||||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  26092888 tacaaatgtcccgaaaaccatagacaattgttctaatactcctctatt 26092935  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 7805705 - 7805777
Alignment:
Q  104 gactcaaata--gaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    ||||||||||  ||||||| |||||||||  | ||||||||| | ||||| |||||||||||||||||||||||    
T  7805705 gactcaaatattgaaaacattacaaatgta-tcaaaatcataagtaattgctctaatactcctctattttggat 7805777  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 13906708 - 13906655
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||| ||||||||||| |||| ||||| ||||||| |||||||||||||    
T  13906708 atagaaaacattacaaatgtcccgaaa-tcataagcaattgatctaatactcctc 13906655  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 18457236 - 18457183
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||| |||||| |||| |||| ||||| |||||||||||||||||||||    
T  18457236 atagaaaacattacaaaagtcccgaaa-tcataggcaattgttctaatactcctc 18457183  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 17135064 - 17135124
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||||||||||||||| | ||||||||  |||||  | ||||||||||||||||||    
T  17135064 atagaaaacaatacaaatgtcc-ggaaatcatagacaattaatataatactcctctattttg 17135124  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 20431445 - 20431497
Alignment:
Q  112 tagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    ||||||||| |||||| ||||||||| ||||| ||||| |||||||||||||||    
T  20431445 tagaaaacattacaaaagtcctgaaa-tcataggcaatcgttctaatactcctc 20431497  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 16242325 - 16242266
Alignment:
Q  104 gactcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcct 164  Q
    ||||||||||||||||  |||||| ||| | ||||||||| ||||| ||||||||||||||    
T  16242325 gactcaaatagaaaactttacaaaagtc-tcaaaatcataggcaatcgttctaatactcct 16242266  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 16157211 - 16157154
Alignment:
Q  109 aaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctcta 167  Q
    |||||||||||| || ||||||||  ||||||||| |||||||||||||||||||||||    
T  16157211 aaatagaaaacattataaatgtccc-aaaatcataagcaattgttctaatactcctcta 16157154  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 8501635 - 8501572
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||| | |||||||||  ||||||||| |||||||||||||||||| |||||| |||||    
T  8501635 atagaaaacattgcaaatgtccc-aaaatcataagcaattgttctaatactcatctattctggat 8501572  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 17350950 - 17351003
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctc 165  Q
    |||||||||| |||||| ||||||||| |||||  ||||||||||||||||||||    
T  17350950 atagaaaacattacaaaagtcctgaaa-tcatagacaattgttctaatactcctc 17351003  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 18545244 - 18545296
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcct 164  Q
    |||||||||||| ||||||||| |||| ||||| ||||||| ||||||||||||    
T  18545244 atagaaaacaattcaaatgtcccgaaa-tcataggcaattgatctaatactcct 18545296  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 18970900 - 18970841
Alignment:
Q  109 aaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatt 169  Q
    |||||||||||| ||||||||||   |||||| || ||||||| |||||||||||||||||    
T  18970900 aaatagaaaacattacaaatgtcgc-aaaatcgtaagcaattgctctaatactcctctatt 18970841  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 32141516 - 32141453
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggat 175  Q
    |||||||||| ||||||||||  |||| ||||| |||||  || |||||||||||||||||||||    
T  32141516 atagaaaacattacaaatgtctcgaaa-tcataagcaatgtttataatactcctctattttggat 32141453  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 41311 - 41371
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    |||||||||| ||||||||| |||||| ||||| ||||||| |||||||||||||| |||||    
T  41311 atagaaaacattacaaatgttctgaaa-tcataggcaattgatctaatactcctctgttttg 41371  T

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Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 88561 - 88502
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctatttt 171  Q
    ||||||||||||||||||||||  |||||||||  |||||| ||||| |||||||||||||    
T  88561 atagaaaacaatacaaatgtcc-caaaatcatagacaattgctctaagactcctctatttt 88502  T

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Target: scaffold0451 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 10218 - 10158
Alignment:
Q  111 atagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttg 172  Q
    ||||||||||||||||||||  ||||| |||||  |||||| |||||||||||||| |||||    
T  10218 atagaaaacaatacaaatgttatgaaa-tcatagacaattgatctaatactcctctgttttg 10158  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 813 - 861
Alignment:
Q  236 agaacaaaatctatgtttctagcactcatgtgcagcgtgtgtcccttcg 284  Q
    ||||||||||||| | |||||||||||| ||| || |||||||||||||    
T  813 agaacaaaatctacgcttctagcactcacgtgtagtgtgtgtcccttcg 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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